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both $^{13}$C-xylose and $^{13}$C-cellulose microcosms differ from
corresponding control gradients (Figure~\ref{fig:ord}). These differences from
control gradients are focused in the heavy fractions (Figure~\ref{fig:ord}).
Also, $^{13}$C-DNA from $^{13}$C-xylose microcosms is different in phylogenetic
composition from $^{13}$C-cellulose microcosm $^{13}$C-DNA indicating that
xylose and cellulose were assimilated by different microbial community members
(Figure~\ref{fig:ord}). In general, analysis Analysis of SSU rRNA gene surveys has
greatly benefited from utilizing conventional methods for data exploration
in ecology such as ordination \citep{Lozupone_2008}. SSU rRNA gene
phylogenetic profiles in CsCl gradient fractions have only recently been
...
$^{13}$C incorporation from xylose and cellulose is most apparent at days 1/3/7
and days 14/30, respectively (Figure~\ref{fig:ord}). Moreover, labeled gradient
fraction phylogenetic profiles diverge from controls most dramatically at
relatively heavy buoyant densities (Figure~\ref{fig:ord}).
Also apparent Also, $^{13}$C-DNA from
the ordination of CsCl gradient phylogenetic profiles $^{13}$C-xylose microcosms is
that OTUs that incorporated
$^{13}$C different in phylogenetic composition from $^{13}$C-cellulose
into DNA are generally different taxa than OTUs microcosm $^{13}$C-DNA indicating that
incoportated $^{13}$C from $^{13}$C-xylose into DNA. xylose and cellulose were assimilated by different microbial community members (Figure~\ref{fig:ord}). Lastly, ordination indicates
$^{13}$C-xylose responders change in phylogenetic type over incubation days 1, 3
and 7 (Figure~\ref{fig:ord}).
\subsection{$^{13}$C .\subsection{$^{13}$C from cellulose was assimilated by canonical
cellulose-degrading and uncharacterized microbial lineages in many phyla
including Chloroflexi and Verrucomicrobia}
Isotope incorporation by an OTU is revealed by enrichment of the OTU in heavy