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chuckpr DHB edits abstract (intro paragraph)
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\section{Introductory Paragraph} We explored the
dynamics of microbial contributions to
decomposition
in soil by
coupling using a sophisticated approach to DNA Stable Isotope Probing
(SIP) and high
throughput DNA sequencing. (SIP). Our experiment evaluated the
degradative succession
hypothesis, described dynamics
of carbon (C) metabolism during organic matter
degradation, and
characterized bacteria ecological characteristics of
functionally defined microbial groups that metabolize labile and structural C
in soils. We added
to soil a complex amendment representing plant derived
organic matter
to soil. We substituted
with either $^{13}$C-xylose or $^{13}$C-cellulose
for their
unlabeled equivalents in two experimental treatments which were monitored for
30 days. Xylose and cellulose are abundant components in plant biomass and to represent labile and structural C
pools, respectively. pools derived from abundant components of
plant biomass. We found evidence for $^{13}$C-incorporation into DNA from
$^{13}$C-xylose and $^{13}$C-cellulose in~49 and~63 operational taxonomic
unites units (OTUs), respectively. The types of microorganisms that
appeared $^{13}$C-labeled assimilated
$^{13}$C in the $^{13}$C-xylose treatment changed over time being predominantly
\textit{Firmicutes} at day~1 followed by \textit{Bacteroidetes} at day~3 and
then \textit{Actinobacteria} at day~7. These
dynamics of $^{13}$C-labeling
dynamics
suggest labile C traveled through different trophic
levels within the soil bacterial community. levels. In contrast,
the
microorganisms
that generally metabolized cellulose-C
increased in relative abundance
later (after 14 days) with the highest number of OTUs exhibiting evidence for
$^{13}$C-assimilation after 14
days. days and did not
change to the same extent in phylogenetic composition over time. Microorganisms
that metabolized cellulose-C belonged to cosmopolitan soil lineages that remain
uncharacterized including \textit{Spartobacteria}, \textit{Chloroflexi} and
\textit{Planctomycetes}.
Using an approach that reveals the C assimilation
dynamics of specific microbial lineages we describe the ecological properties
of functionally defined microbial groups that contribute to decomposition in
soil.