Chuck minor edits  almost 9 years ago

Commit id: 622b0bf253ee76813d19695e4dad24b4e85f9d08

deletions | additions      

       

\textit{Spartobacteria} clades (Figure~\ref{fig:tiledtree}), and these shared $<$  85\% SSU rRNA gene sequence identity to any characterized isolate. The  \textit{Spartobacteria} OTU ``OTU.2192'' exemplified many cellulose responders  (Table~\ref{tab:cell}, Figure~\ref{:fig:example}, Table~\ref{tab:cell}). Figure~\ref{fig:example}).  ``OTU.2192'' increased in non-fractionated DNA relative abundance with time and  evidence for $^{13}$C labeling of ``OTU.2192'' in the $^{13}$C-cellulose  treatment increased over time with the strongest evidence at days~14 and~30         

@article{camacho2009,  eprinttype = {pmid},  eprint = {20003500},  pmcid = {PMC2803857},  title = {{BLAST}+: architecture and applications},  volume = {10},  issn = {1471-2105},  doi = {10.1186/1471-2105-10-421},  shorttitle = {{BLAST}+},  timestamp = {2015-07-08 10:56:44},  journaltitle = {{BMC} bioinformatics},  journal = {{BMC} Bioinformatics},  author = {Camacho, Christiam and Coulouris, George and Avagyan, Vahram and Ma, Ning and Papadopoulos, Jason and Bealer, Kevin and Madden, Thomas L.},  date = {2009},  year = {2009},  pages = {421},  }  @article{altschul1990,  eprinttype = {pmid},  eprint = {2231712},  title = {Basic local alignment search tool},  volume = {215},  issn = {0022-2836},  doi = {10.1016/S0022-2836(05)80360-2},  timestamp = {2015-07-08 10:56:47},  number = {3},  journaltitle = {Journal of Molecular Biology},  journal = {J Mol Biol},  author = {Altschul, S. F. and Gish, W. and Miller, W. and Myers, E. W. and Lipman, D. J.},  date = {1990-10-05},  year = {1990},  pages = {403--410},  keywords = {Algorithms,Amino Acid Sequence,Base Sequence,Databases, Factual,Mutation,Sensitivity and Specificity,Sequence Homology, Nucleic Acid,Software}  }  @article{yarza2008,  eprinttype = {pmid},  eprint = {18692976},  title = {The All-Species Living Tree project: a 16S {rRNA}-based phylogenetic tree of all sequenced type strains},  volume = {31},  issn = {0723-2020},  doi = {10.1016/j.syapm.2008.07.001},  shorttitle = {The All-Species Living Tree project},  timestamp = {2015-07-08 10:54:35},  number = {4},  journaltitle = {Systematic and Applied Microbiology},  journal = {Syst Appl Microbiol},  author = {Yarza, Pablo and Richter, Michael and Peplies, Jörg and Euzeby, Jean and Amann, Rudolf and Schleifer, Karl-Heinz and Ludwig, Wolfgang and Glöckner, Frank Oliver and Rosselló-Móra, Ramon},  date = {2008-09},  year = {2008},  pages = {241--250},  }  @article{Linn_1984,  doi = {10.2136/sssaj1984.03615995004800040019x},  year = {1984}, 

volume = {29},  issn = {0038-0717},  doi = {10.1016/S0038-0717(96)00265-9},  shorttitle = {Different {NH}4+-inhibition {NH}$_{4}$$^{+}$-inhibition  patterns of soil {CH}4 {CH}$_{4}$  consumption}, timestamp = {2015-06-05 20:21:07},  number = {1},  journal = {Soil Biol Biochem}, 

keywords = {Bacterial diversity,community dynamics,Detritusphere,Fungal diversity,Plant residue,Soil microcosms},  }  @inbook{AnneliseHKjoller2002, @incollection{AnneliseHKjoller2002,  title = {Fungal Communities, Succession, Enzymes, and Decomposition},  isbn = {978-0-8247-0614-2},  volumes = {0}, 

timestamp = {2015-06-05 16:34:23},  booktitle = {Monomers, Polymers and Composites from Renewable Resources},  publisher = {Elsevier},  address = {New York},  author = {Spiridon, Iuliana and Popa, Valentin I.},  editor = {Belgacem, Mohamed Naceur and Gandini, Alessandro},  date = {2008},