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Chuck trimming discussion
about 9 years ago
Commit id: 52396ba1d278a5147237b9a7c841a0dd1f72f5b2
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\section{Discussion}
% Fakesubsubsection:Pure culture based studies drove early
Pure culture based studies
drove early have historically driven soil microbial ecology
research.
Historically important soil isolates included nine genera:
\textit{Agrobacterium}, \textit{Alcaligenes}, \textit{Arthrobacter},
\textit{Bacillus}, \textit{Flavobacterium}, \textit{Micromonospora},
\textit{Nocardia}, \textit{Pseudomonas}, and \textit{Streptomyces}
(\citep{Alexander1977} and reviewed by \citep{Janssen2006}) research but
culture-independent surveys of soil microbial diversity revealed soil can
harbor 5,000 OTUs per half gram of soil \citep{Schloss2006} and that cultured isolates
did have not
represent captured \textit{in situ} numerically
abundant
genera. We
recovered almost 6,000 OTUs in this study. Although culturing techniques can
produce isolates from diverse soil phylogenetic lineages \citep{Janssen2002},
numerically dominant soil microorganisms are still uncultured and we know
little of their ecophysiology genera \citep{Janssen2006}.
In contrast, DNA-SIP can
characterize functional roles for thousands of phylotypes in a single
experiment. experiment without cultivation. We found 104 OTUs in an agricultural soil that
can incorporate from xylose and/or cellulose into
biomass. We biomass and also used DNA-SIP
to
assay characterize substrate specificity and
temporal dynamics of C-cycling
or dynamics for soluble and
polymeric C degraders. Included in
the characterized $^{13}$C-xylose and
$^{13}$C-cellulose responsive OTUs were members of
numerically dominant cosmopolitan yet
functionally uncharacterized soil phylogenetic groups such as
\textit{Verrucomicrobia}, \textit{Planctomycetes} and \textit{Chloroflexi}.
\subsection{Microbial response to isotopic labels}
% Fakesubsubsection: We propose that microbial decomposition