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Jennifer Shelton edited results.tex
over 8 years ago
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\subsection{Data}
Fasta-O-Matic and two
pther other common FASTA tools that can wrap a FASTA file were tested on the Vicugna\_pacos-2.0.1 whole genome shotgun sequence scaffolds because the 2.17 Gb \textit{Vicugna pacos} genome is large (> 1 Gb) and has many scaffolds (276727). The large genome size and high number of individual sequences should approximate a typical large FASTA file. The FASTA file was downloaded from the NCBI FTP as NW\_005882702.1 Vicugna pacos isolate Carlotta (AHFN-0088) Vicugna\_pacos-2.0.1 assembly scaffolds.
An additional unwrapped sequence was added to the end of the file. This sequence was also missing a newline. Each FASTA record in the file also had spaces within the text of the headers.
Additional simulated FASTA record:
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The number of contigs is: 276727