Jennifer Shelton edited results.tex  over 8 years ago

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\subsection{Data}  Fasta-O-Matic and two pther other  common FASTA tools that can wrap a FASTA file were tested on the Vicugna\_pacos-2.0.1 whole genome shotgun sequence scaffolds because the 2.17 Gb \textit{Vicugna pacos} genome is large (> 1 Gb) and has many scaffolds (276727). The large genome size and high number of individual sequences should approximate a typical large FASTA file. The FASTA file was downloaded from the NCBI FTP as NW\_005882702.1 Vicugna pacos isolate Carlotta (AHFN-0088) Vicugna\_pacos-2.0.1 assembly scaffolds. An additional unwrapped sequence was added to the end of the file. This sequence was also missing a newline. Each FASTA record in the file also had spaces within the text of the headers.  Additional simulated FASTA record: 

The number of contigs is: 276727