| Name | URL | License | Activity | Citation |
|---|---|---|---|---|
| Avogadro | http://avogadro.cc | GPL | A1 | \cite{Hanwell_2012} |
| BALLView | http://www.ball-project.org/ballview | LPGL | A2 | \cite{Moll_2005} |
| gMol | https://github.com/tjod/gMol/wiki | GPL | A3 | |
| Jamberoo | https://sourceforge.net/projects/jbonzer | LGPL | A3 | |
| LPMV | https://sourceforge.net/projects/lpmolecularviewer | LGPL | B3 | |
| Luscus | https://sourceforge.net/projects/luscus | Academic | A1 | \cite{Kova_evi__2015} |
| Molecular Rift | https://github.com/Magnusnorrby/MolecularRift | GPL | A3 | \cite{Norrby_2015} |
| OpenStructure | http://www.openstructure.org | LGPL | A2 | \cite{Biasini_2013} |
| PLIP | https://github.com/ssalentin/plip | Apache | A2 | \cite{Salentin_2015} |
| PyMOL | https://sourceforge.net/projects/pymol | Python | A1 | |
| RasTop | https://sourceforge.net/projects/rastop | GPL | C1 | |
| OpenRasMol | https://sourceforge.net/projects/openrasmol | GPL | C1 | |
| SPADE | http://www.spadeweb.org | BSD | C3 | \cite{sweeney2011computational} |
| QuteMol | http://qutemol.sourceforge.net | GPL | C1 | \cite{Tarini_2006} |