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David Koes edited paragraph_2D_Desktop_Applications_BKChem__.tex
about 8 years ago
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SketchEl is a Java-based 2D molecular editor that includes support for a datasheet view for handling multi-molecule files.
WCSE (Wikipedia chemical structure explorer) \cite{Ertl_2015} runs as a web application and provides a 2D interface for visualizing and searching for 2D molecules.
\paragraph{3D Desktop Applications}
Lscus \cite{Kova_evi__2015} is a 3D viewer and editor that is designed with a focus on quantum chemical information.
OpenStructure \cite{Biasini_2013} is a computational structural biology framework that provides 3D viewer for manipulating structural information that includes an interactive Python shell.
PLIP (Protein-Ligand Interaction Profiler) \cite{Salentin_2015} runs as a web application and analyzes and visualizes protein-ligand interactions in 3D.
PyMOL is substantial 3D molecular viewer that includes a full
python Python interface to support scripting and plugin development.
RasTop and OpenRasMol are based off the venerable RasMol software and provide basic 3D visualization.
\paragraph{2D Web Components}