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David Koes edited subsection_Toolkits_Table_ref_chemtool__.tex
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\subsection*{Graphical Development Environments (Table~\ref{chemgui})}
Ambit \cite{Jeliazkova_2011} integrates with the CDK to provide web-based applications for chemical search and
analysis. analysis and includes a tautomer generation algorithm \cite{Kochev_2013}.
Bioclipse \cite{Spjuth_2009} is a workbench, based on the Eclipse framework, for manipulating and analyzing biochemical data and databases. It integrates with the CDK and Jmol to provide cheminformatic functionality and also has modules for bioinformatics (primarly sequence analysis) and QSAR modeling.