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Luscus \cite{Kova_evi__2015} is a 3D viewer and editor that is designed with a focus on electronic structure information.  Molecular Rift \cite{Norrby_2015} integrates with the Oculus Rift virtual reality headset to provide immersive visualization of 3D molecular data.  OpenStructure \cite{Biasini_2013} is a computational structural biology framework that provides a 3D viewer for manipulating structural information and includes an interactive Python shell.  PLIP (Protein-Ligand Interaction Profiler) \cite{Salentin_2015} runs as a web application and analyzes and visualizes protein-ligand interactions in 3D.