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BALLView \cite{Moll_2005} provides interactive 3D visualizations as part of the BALL \cite{Hildebrandt_2010} cheminformatics toolkit.  gMol provides basic interactive 3D visualizations of molecular data readable by Open Babel.  Jamberoo provides a basic Java-based 3D molecular viewer and editor.  Luscus \cite{Kova_evi__2015} is a 3D viewer and editor that is designed with a focus on quantum chemical information.