deletions | additions       diff --git a/APBS_cite_Baker_2001_performs_solvation__.tex b/APBS_cite_Baker_2001_performs_solvation__.tex  index f18476f..322025d 100644  --- a/APBS_cite_Baker_2001_performs_solvation__.tex  +++ b/APBS_cite_Baker_2001_performs_solvation__.tex 
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ProDy \cite{Bakan_2011} is a Python toolkit for analyzing proteins and includes facilities for trajectory analysis and druggability predictions using simulations of molecular probes \cite{Bakan_2012}.  ProtoMol \cite{Matthey_2004}, and the associated MDLab Python bindings \cite{Cickovski_2009}, provides an object-oriented framework for prototyping algorithms for molecular dynamics simulations and includes an interface to OpenMM.  ProtoMS \cite{Michel_2006} is a Monte Carlo biomolecular simulation program which can be used to calculate relative and absolute free energies and water placement with GCMC and JAWS methodology.  Pteros \cite{Yesylevskyy_2015} is a C++ library (with Python bindings) for reading and analyzing molecular dynamics trajectories.