deletions | additions       diff --git a/paragraph_Docking_ADplugin_is_a__.tex b/paragraph_Docking_ADplugin_is_a__.tex  index 5012f65..9b68039 100644  --- a/paragraph_Docking_ADplugin_is_a__.tex  +++ b/paragraph_Docking_ADplugin_is_a__.tex 
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\paragraph{Docking} \paragraph{Docking (Table~\ref{structable})}  ADplugin is a plugin for PyMOL for interfacing with AutoDock and AutoDock Vina. 
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Zodiac \cite{Zonta_2008} is a visual interface for structure-based drug design that includes support for haptic feedback.  \paragraph{Pocket Detection} Detection (Table~\ref{pockettable})}  eFindSite \cite{Brylinski_2013} using homology modeling and machine learning to predict ligand binding sites in a protein structure.  fpocket \cite{Schmidtke_2011} detects and delineates protein cavities using Voronoi tessellation and is able to process molecular dynamics simulations.