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### Next Steps  The workshop has performed some novel analyses, this is a preliminary work. It's clear the estimate of transcript initiation has a tremendous amount of uncertainty associated with it. Microarray probe sets are not distinctly comparable with each other as the specific sequences of the probes vary in their target affinity. The proteome has   Nonsense Within the cell processes abound that can all affect the actual amount of protein produced compared to the mRNA reported by a microarray. Just a few of these may include nonsense  mediated decay, inhibitory RNA, post-translational editing, protein sorting amongst cellular compartments, secondary structure in the mRNA can all affect the ratio mRNA.  The next step will be to test the