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David Andrew Eccles edited section_Discussion_label_sec_sig__.tex
almost 9 years ago
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It is known that genetic variation within the HLA region on chromosome
6 plays an important role in T1D, accounting for about 50\% of the
genetic susceptibility for T1D
\cite[see][]{daneman06}. \citep[see][]{daneman06}. This role is
supported by the preliminary results in the present study, which show
consistently strong predictive power using genetic markers, all but
one from this region alone (see Table~\ref{tab:top5-snps-t1d}).
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model being observed. The problem exists when vital information about
the model is missing, and the discovery algorithm ends up being
required to derive a model based on other spurious distinctions
between discovery groups
\cite[see][Chapter \citep[see][Chapter 14, pp.
661-663]{russell2003}. Overfitting is applicable to the case of
generating minimal marker sets because any such method assumes that a
minimal set can be found for the data. When cases and controls are not
...
computational requirements for such testing combined with the
increased danger of overfitting due to small cell sizes, make such an
analysis effectively useless when carried out on the total marker set
\cite[see][]{province08}. \citep[see][]{province08}.
The bootstrapping approach as outlined here does not consider
combinations of genetic markers. However, it provides an efficient way
...
smaller set can then be used by programs that determine multi-way
interactions, which are typically computationally expensive
procedures.