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Jan Jensen added An_overview_of_the_terms__.tex
almost 9 years ago
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An overview of the terms of Eq \ref{eqn:procs} used in ProCS15 for each atom type can be found Table \ref{table:terms} and the RMSD and $r$ values obtained using this combination of terms are given in the row labeled "ProCS15" in Table \ref{table:vsqm}. The RMSD value for the carbon atoms range from 1.5 to 2.5 ppm and the RMSD values for CB for the two proteins are different by 0.7 ppm. The $r$ values range between 0.63 and 0.84 with the $r$ value being consistently highest for CA. For the hydrogen atoms the RMSD and $r$ values range from 0.5 to 0.6 ppm and 0.82 to 0.91, respectively. Finally, for N the RMSD values are 4.3 (1UBQ) and 2.7 (2OED), while the corresponding $r$ values are 0.74 and 0.92. It is not clear why the results for N are so different for these two proteins.
