deletions | additions       diff --git a/figures/H1N1Ht_seg7/caption.tex b/figures/H1N1Ht_seg7/caption.tex  index 619b602..04c5853 100644  --- a/figures/H1N1Ht_seg7/caption.tex  +++ b/figures/H1N1Ht_seg7/caption.tex 
...
\label{fig:H1N1Ht_seg7} Summary statistics at each genome position for H1H1 Segment 7. The top and bottom panels are from Replicates I \& II, respectively. The small green circles and blue pluses are the $Ht(D_i)$ values and $Ht(N_i)$ values, respectively. Within each replicate, for genome site $i$ that belongs to the signal set, its $Ht(D_i)$ value is highlighted in a large red circle. The dotted lines are the thresholds obtained from our method (see Figure \ref{fig:H1N1Ct_seg67}). In the top panel, the red circle corresponds to genome site S7-503. Although this position is highlighted, $Ht(D_{S7-503})$ is close to the threshold, and there are other sites present higher values in both $Ht(D_i)$ and $Ht(N_i)$. Genome sites S7-91 and S7-112 also have above threshold $Ht(D_i)$ values, however, the $Ht(N_i)$ values at the two sites are even larger. Therefore, they do not belong to signal set.   In the bottom panel, there is only one green circle above the threshold, it is genome site S7-91. Similar to Seg7E1, its $Ht(N_{S7-91}) >Ht(D_{S7-91})$, it therefore does not belong to the signal set. Since there is not signal in Segment 7 based on Replicate II, we We  conclude that there is no substitution sites due to the treatment on this segment.