Carbon monoxide (CO) is an ozone precursor, oxidant sink, and widely-used pollution tracer. The importance of anthropogenic versus other CO sources in the US is uncertain. Here we interpret extensive airborne measurements with an atmospheric model to constrain US fossil and non-fossil CO sources. Measurements reveal a low bias in the simulated CO background and a 30% overestimate of US fossil CO emissions in the 2016 National Emissions Inventory. After optimization we apply the model for source partitioning. During summer, regional fossil sources account for just 9-16% of the sampled boundary layer CO, and 32-38% of the North American enhancement-complicating use of CO as a fossil fuel tracer. The remainder predominantly reflects biogenic hydrocarbon oxidation plus fires. Fossil sources account for less domain-wide spatial variability at this time than non-fossil and background contributions. The regional fossil contribution rises in other seasons, and drives ambient variability downwind of urban areas.