Authorea

September 26, 2014

Johannes Alneberg Merge branch 'upstream' into authorea_conflicts over 9 years ago Compare 6d87e16...

September 26, 2014

Johannes Alneberg New Article! over 9 years ago Compare 305c13b...

August 14, 2014

Ino de Bruijn Add more LCA plots over 9 years ago Compare 1ff357f...
Ino de Bruijn One panel with multiple recipes for LCA over 9 years ago Compare 780b076...
Ino de Bruijn Add chimeric/erroneous kmer catergorization over 9 years ago Compare 2e0815b...
Ino de Bruijn Small changes over 9 years ago Compare 1be98f3...
Ino de Bruijn Try some kde for contig purity length over 9 years ago Compare 92a2a15...
Ino de Bruijn Fixes legend cut-off over 9 years ago Compare 359e382...

August 13, 2014

Ino de Bruijn Add erronoeous kmer classification over 9 years ago Compare d2c6f1a...
Ino de Bruijn mgcov and refcov plots over 9 years ago Compare 619f35c...

August 10, 2014

Ino de Bruijn mgcov interactive legend over 9 years ago Compare 4d65814...
Ino de Bruijn Init pdf of report over 9 years ago Compare 7b906f8...
Ino de Bruijn Add Kraken plots over 9 years ago Compare 8caa1c1...

August 09, 2014

Ino de Bruijn mpld3 interactive legend purity thresholds over 9 years ago Compare 08a5bac...
Ino de Bruijn Improve purity histograms legend and eps save over 9 years ago Compare 9c52642...
Ino de Bruijn mpld3 interactive legend test over 9 years ago Compare 583ef24...

August 08, 2014

Ino de Bruijn Start work on publication figures over 9 years ago Compare 3865f8b...

August 07, 2014

Ino de Bruijn Add uneven community plots over 9 years ago Compare 813a870...

August 06, 2014

Ino de Bruijn add more reapr plots over 9 years ago Compare d9a92e3...
Ino de Bruijn Add reapr plot over 9 years ago Compare 043f5ff...

August 05, 2014

Ino de Bruijn Start add of reapr validation over 9 years ago Compare 3e97112...
Ino de Bruijn Start add of reapr validation over 9 years ago Compare 852a407...

August 04, 2014

Ino de Bruijn plos template files over 9 years ago Compare 000c6d5...

August 03, 2014

Ino de Bruijn Use mpld3 to investigate kmer error correlation lines over 9 years ago Compare 47b8ca0...
Ino de Bruijn Add extra purity thresholds for metagenome coverage. Add ... over 9 years ago Compare ad54264...

August 01, 2014

Ino de Bruijn Add metagenome coverage with varying purity thresholds. over 9 years ago Compare 260e428...

July 31, 2014

Ino de Bruijn Update some old plots with seaborn style over 9 years ago Compare 301c959...
Ino de Bruijn Add violinplot and alpha dots of purity/length plot. KDE ... over 9 years ago Compare 1f0b6d1...
Ino de Bruijn Venn diagram + correlation with nucmer's contig purity of... over 9 years ago Compare 815812b...

July 30, 2014

Ino de Bruijn Update Kraken to count proper rank LCA for each kmer over 9 years ago Compare 2c52f0d...

July 29, 2014

Ino de Bruijn Investigate different features from FRC over 9 years ago Compare 9653263...
Ino de Bruijn Add pure-only metagenome coverage over 9 years ago Compare a0ae3fa...
Ino de Bruijn Add FRC check for selecting pure contigs over 9 years ago Compare 15a9489...

July 28, 2014

Ino de Bruijn Investigate selecting pure contigs with coverage stats. over 9 years ago Compare 3159c81...
Ino de Bruijn Try only pure alignments metagenome coverage per contig. ... over 9 years ago Compare a148685...
Ino de Bruijn Rename filtered pairs assemblies pt2 notebook over 9 years ago Compare 92eb2a1...
Ino de Bruijn Compare kraken kmer purity against nucmer purity over 9 years ago Compare 1687da3...

July 25, 2014

Ino de Bruijn Add notes after Chris discussion. Add note to Kraken almost 10 years ago Compare 8da8526...
Ino de Bruijn Add all asm filtered pairs even plots almost 10 years ago Compare cc0dc9d...
Ino de Bruijn Add quast analysis almost 10 years ago Compare ae9567a...

July 24, 2014

Ino de Bruijn Merge branch 'master' of https://github.com/inodb/masmval... almost 10 years ago Compare 9cf7be0...
Ino de Bruijn Add coverage distribution check for uneven community almost 10 years ago Compare 90e2ca3...

July 23, 2014

inodb Create README.md almost 10 years ago Compare 9190f4e...

July 22, 2014

Ino de Bruijn Investigate coverage distribution after filtering reads almost 10 years ago Compare 445a433...

July 18, 2014

Ino de Bruijn Finished LCA plot for Kraken almost 10 years ago Compare 9c55d6a...

July 17, 2014

Ino de Bruijn Add kraken kmer origin counting almost 10 years ago Compare 150004c...

July 16, 2014

Ino de Bruijn Investigated kmer composition some more. Turns out low pu... almost 10 years ago Compare 4b729a2...

July 15, 2014

Ino de Bruijn Further work on counting kmers. Can output tsv now of con... almost 10 years ago Compare b1a9437...

July 14, 2014

Ino de Bruijn Start counting kmers for chimerism detection almost 10 years ago Compare c89407e...

July 10, 2014

Ino de Bruijn Add N/A contig alignment and low purity alignment investi... almost 10 years ago Compare d97e302...

July 09, 2014

Ino de Bruijn Init user given assembly plot almost 10 years ago Compare 633c95f...

July 08, 2014

Ino de Bruijn Add contig overhang text and updated masmvali code (seems... almost 10 years ago Compare fb2be44...

July 07, 2014

Ino de Bruijn Add old metagenome coverage line in plot almost 10 years ago Compare ff1e8db...
Ino de Bruijn Update commit log message from masmvali almost 10 years ago Compare b3c0913...
Ino de Bruijn Add metagenome coverage plots almost 10 years ago Compare e6e1c36...
Ino de Bruijn Add histogram purity plots and lowest purity inspection w... almost 10 years ago Compare 69e2ffb...

July 04, 2014

Ino de Bruijn Purity with removing pairs and references almost 10 years ago Compare 0d25905...

July 01, 2014

Ino de Bruijn more purity research almost 10 years ago Compare 38838fb...
Ino de Bruijn purity research almost 10 years ago Compare a60e613...
Ino de Bruijn Read coverage mean versus Genome contig coverage almost 10 years ago Compare 0a21b94...

March 21, 2014

Ino de Bruijn Init plots for masmvali on new LIMS1884 sample. about 10 years ago Compare a33fa98...