Figure 7 - S. meliloti functional gene
categories differentially elicited by fungal spent media. PCA biplots
of COG categories percentages among a) up-regulated and b)
down-regulated DEGs. Centroids report the name of all S.
meliloti -Trichoderma conditions and vectors indicate the
loadings of the COG categories. Definitions for observed COG categories
are: [J] Translation, ribosomal structure, and biogenesis; [K]
Transcription;[L] Replication, recombination and repair; [M]
Cell wall/membrane/envelope biogenesis; [O] Posttranslational
modification, protein turnover, chaperones; [C] Energy production
and conversion; [G] Carbohydrate transport and metabolism; [E]
Amino acid transport and metabolism; [F] Nucleotide transport and
metabolism; [H] Coenzyme transport and metabolism; [I] Lipid
transport and metabolism; [P] Inorganic ion transport and
metabolism; [S] Function unknown.
Table 1 - The extent of stimulons in S. melilotistrains treated with Trichoderma sp. spent media. The number of
significant DEGs with respect to the black control
(>|2|-fold change in expression and an
adjusted P value of <0.01) and the percentage with respect to
the total number of genes in each S. meliloti genome are
reported.