Figure 7 - S. meliloti functional gene categories differentially elicited by fungal spent media. PCA biplots of COG categories percentages among a) up-regulated and b) down-regulated DEGs. Centroids report the name of all S. meliloti -Trichoderma conditions and vectors indicate the loadings of the COG categories. Definitions for observed COG categories are: [J] Translation, ribosomal structure, and biogenesis; [K] Transcription;[L] Replication, recombination and repair; [M] Cell wall/membrane/envelope biogenesis; [O] Posttranslational modification, protein turnover, chaperones; [C] Energy production and conversion; [G] Carbohydrate transport and metabolism; [E] Amino acid transport and metabolism; [F] Nucleotide transport and metabolism; [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism; [P] Inorganic ion transport and metabolism; [S] Function unknown.
Table 1 - The extent of stimulons in S. melilotistrains treated with Trichoderma sp. spent media. The number of significant DEGs with respect to the black control (>|2|-fold change in expression and an adjusted P value of <0.01) and the percentage with respect to the total number of genes in each S. meliloti genome are reported.