REFERENCES
Adams, S. M., Lindmeier, J. B., & Duvernell, D. D. (2006).
Microsatellite analysis of the phylogeography, Pleistocene history and
secondary contact hypotheses for the killifish, Fundulus
heteroclitus . Molecular Ecology , 15(4), 1109-1123.
https://doi.org/10.1111/j.1365-294X.2006.02859.x
Allendorf, F. W. (1983). Isolation, gene flow, and genetic
differentiation among populations. Conservation Genetics .
Allio, R., Donega, S., Galtier, N., & Nabholz, B. (2017). Large
variation in the ratio of mitochondrial to nuclear mutation rate across
animals: implications for genetic diversity and the use of mitochondrial
DNA as a molecular marker. Molecular Biology and Evolution ,
34(11), 2762-2772. https://doi.org/10.1093/molbev/msx197
Ashrafzadeh, M., Khosravi, R., Fernandes, C., Aguayo, C., Bagi, Z.,
Lavadinovic, V. M., Szendrei, L., Beukovic, D., Mihalik, B., & Kusza,
S. (2021). Assessing the origin, genetic structure and demographic
history of the common pheasant (Phasianus colchicus ) in the
introduced European range. Scientific Reports , 11, 21721.
https://doi.org/10.1038/s41598-021-00567-1
Avise, J. C., Arnold, J., Ball, R. M., Bermingham, E., Lamb, T., Neigel,
J. E., Reeb, C. A., & Saunders, N. C. (1987). Intraspecific
phylogeography: the mitochondrial DNA bridge between population genetics
and systematics. Annual Review of Ecology and Systematics , 18,
489-522. https://doi.org/10.1146/annurev.es.18.110187.002421
Barrientos-Villalobos, J., & Schmitter-Soto, J. J. (2019).
Phylogeography of the Mayan cichlid Mayaheros urophthalmus(Teleostei: Cichlidae) in the Yucatan peninsula based on mitochondrial
markers CYTB and COI. Environmental Biology of Fishes , 102,
1461-1472. https://doi.org/10.1007/s10641-019-00920-4
Bouckaert, R., Vaughan, T. G., Barido-Sottani, J., Duchêne, S.,
Fourment, M., Gavryushkina, A., Heled, J., Jones, G., Kuhnert, D., Maio,
N. D., Matschiner, M., Mendes, F. K., Muller, N. F., Ogilvie, H. A.,
Plessis, L. D., Popinga, A., Rambaut, A., Rasmussen, D., Siveroni, L.,
Suchard, M. A., Wu, C. H., Xie, D., Zhang, C., Stadler, T., & Drummond,
A. J. (2019). BEAST 2.5: an advanced software platform for Bayesian
evolutionary analysis. PLoS Computational Biology . 15, e1006650.
https://doi.org/10.1371/journal.pcbi.1006650
Caccavo, J. A., Papetti, C., Wetjen, M., Knust, R., Ashford, J. R., &
Zane, L. (2018). Along-shelf connectivity and circumpolar gene flow in
Antarctic silverfish (Pleuragramma antarctica ). Scientific
Reports , 8(1), 1-16. https://doi.org/10.1038/s41598-018-36030-x
Canfield, S. J., Galvan-Magana, F., & Bowen, B. W. (2022). Little
sharks in a big world: Mitochondrial DNA reveals small-scale population
structure in the California horn shark (Heterodontus francisci ).Journal of Heredity , 113, 298-310.
https://doi.org/10.1093/jhered/esac008
Chen, D. G., & Zhang, M. Z. (2015). Marine Fishes of China .
Qingdao, China Ocean University Press.
Chen, T., Li, J., & Ni, L. L. (2022). The phylogeographical pattern of
the Amur minnow Rhynchocypris lagowskii (Cypriniformes:
Cyprinidae) in the Qinling Mountains. Ecology and Evolution , 12,
e8924. https://doi.org/10.1002/ece3.8924
Crandall, K. A., & Templeton, A. R. (1993). Empirical tests of some
predictions from coalescent theory with applications to intraspecific
phylogeny reconstruction. Genetics , 134(3), 959-969.
https://doi.org/10.1093/genetics/134.3.959
Darriba, D., Taboada, G. L., Doallo, R., & Posada, D. (2012).
jModelTest 2: More models, new heuristics and parallel computing.Nature Methods , 9(8), 772. https:/ /doi.org/10.1038/nmeth.2109
Delrieu-Trottin, E., Mona, S., Maynard, J., Neglia, V., Veuille, M., &
Planes, S. (2017). Population expansions dominate demographic histories
of endemic and widespread Pacific reef fishes. Scientific
Reports , 7, 40519. https://doi.org/10.1038/srep40519
DeWoody, J. A., Harder, A. M., Mathur, S., & Willoughby, J. R. (2021).
The long-standing significance of genetic diversity in conservation.Molecular Ecology , 30, 4147-4154.
https://doi.org/10.1111/mec.16051
Ding, S. X., Mishra, M., Wu, H. H., Liang, S., & Miyamoto, M. M.
(2018). Characterization of hybridization within a secondary contact
region of the inshore fish, Bostrychus sinensis , in the East
China Sea. Heredity , 120(1), 51-62.
https://doi.org/10.1038/s41437-017-0011-8
Excoffier, L., & Lischer, H. E. (2010). Arlequin suite ver 3.5: a new
series of programs to perform population genetics analyses under Linux
and Windows. Molecular Ecology Resources . 10, 564-567.
https://doi.org/10.1111/j.1755-0998.2010.02847.x
Fu, Y. X., & Li, W. H. (1993). Statistical tests of neutrality of
mutations. Genetics , 133(3), 693-709. https:/
/doi.org/10.1093/genetics/133.3.693
Galtier, N., Nabholz, B., Glémin, S., & Hurst, G. D. D. (2009).
Mitochondrial DNA as a marker of molecular diversity: a reappraisal.Molecular ecology , 18(22), 4541-4550.
https://doi.org/10.1111/j.1365-294X.2009.04380.x
Gao, B. B., Song, N., Li, Z. L., Gao, T. X., & Liu, L. Q. (2019).
Population genetic structure of Nuchequula mannusella(Perciformes: Leiognathidae) population in the Southern Coast of China
inferred from complete sequence of mtDNA Cyt b gene. Pakistan
Journal of Zoology , 51(4), 1527-1535.
http://doi.org/10.17582/journal.pjz/2019.51.4.1527.1535
Grant, W. A. S., & Bowen, B. W. (1998). Shallow population histories in
deep evolutionary lineages of marine fishes: Insights from sardines and
anchovies and lessons for conservation. Journal of Heredity ,
89(5), 415-426. https://doi.org/10.1093/jhered/89.5.415
Halasan, L. C., Geraldino, P. J. L., & Lin, H. C. (2021). First
evidence of cryptic species diversity and population structuring ofSelaroides leptolepis in the Tropical Western Pacific.Frontiers in Marine Science , 8, 1535.
https://doi.org/10.3389/fmars.2021.756163
Hall, B. G. (2016). Phylogenetic Trees Made Easy : A How-to
Manual, Beijing: Higher Education Press.
Hardy, G., Jing, L., Leis, J. L., Liu, M., Matsuura, K., & Shao, K.
(2014). Lagocephalus spadiceus . The IUCN Red List of Threatened
Species. https://doi.org/10.2305/IUCN.UK.2014-3.RLTS.T193622A2248751.en
He, L. J., Zhang, A. B., Weese, D., Zhu, C. D., Jiang, C. J., & Qiao,
Z. G. (2010). Late Pleistocene population expansion of Scylla
paramamosain along the coast of China: A population dynamic response to
the Last Interglacial Sea level highstand. Journal of Experimental
Marine Biology and Ecology , 385(1), 20-28.
http://doi.org/10.1016/j.jembe.2010.01.019
Hewitt, G. M. (2000). The genetic legacy of the Quaternary ice ages.Nature , 405, 907-913. https://doi.org/10.1038/35016000
Kumar, S., Stecher, G., and Tamura, K. (2016). MEGA7: Molecular
evolutionary genetics analysis version 7.0 for bigger datasets.Molecular Biology and Evolution . 33(7), 1870-1874.
https://doi.org/10.1093/molbev/msw054
Leigh, J. W., & Bryant, D. (2015). PopART: Full-feature software for
haplotype network construction. Methods in Ecology and Evolution ,
6(9), 1110-1116. https://doi.org/10.1111/2041-210X.12410
Li, H., Lin, H. D., Li, J. L., & Ding, S. X. (2014). Phylogeography of
the Chinese beard eel, Cirrhimuraena chinensis Kaup, inferred
from mitochondrial DNA: A range expansion after the last glacial
maximum. International Journal of Molecular Sciences , 15(8),
13564-13577. http://doi.org/10.3390/ijms150813564
Li, N., Wang, J. H., Han, C. H., Zhang, H. Y., Zhao, X., Zhang, J., Li,
F. Q., & Jiang, T. (2018). Application of COI and Cyt b gene in species
identification of pufferfish. Chinese Journal of Food Hygiene ,
30(1), 6-11. https://doi.org/10.13590/j.cjfh.2018.01.002.
Liu, J. X., Gao, T. X., & Wu, S. F. (2007). Pleistocene isolation in
the Northwestern Pacific marginal seas and limited dispersal in a marine
fish, Chelon haematocheilus (Temminck & Schlegel, 1845).Molecular Ecology , 16(2), 275-288.
https://doi.org/10.1111/j.1365-294X.2006.03140.x
Liu, J., Wu, R. X., Kang, B., & Ma, L. (2016). Fishes of Beibu
Gulf . Beijing, Science Press.
Machado-Schiaffino, G., Campo, D., & Garcia-Vazquez, E. (2009). Strong
genetic differentiation of the Austral hake (Merluccius
australis ) across the species range. Molecular Phylogenetics and
Evolution , 53, 351-356. https://doi.org/10.1016/j.ympev.2009.02.017
Mather, A. T., Hanson, J. O., Pope, L. C., & Riginos, C. (2017).
Comparative phylogeography of two co-distributed but ecologically
distinct rainbowfishes of far-northern Australia. Journal of
Biogeography , 45(1), 127-141. https://doi.org/10.1111/jbi.13117
Mccusker, M. R., & Bentzen, P. (2010). Phylogeography of 3 North
Atlantic Wolffish species (Anarhichas spp.) with phylogenetic
relationships within the family Anarhichadidae. Journal of
Heredity , 101(5), 591-601. https://doi.org/10.1093/jhered/esq062
Moritz, C., Dowlin, T. E., & Brown, W. M. (1987). Evolution of animal
mitochondrial DNA: relevance for population biology and systematics.Annual Review of Ecology and Systematics , 18, 269-292.
https://doi.org/10.1146/ANNUREV.ES.18.110187.001413
Nabholz, B., Glemin, S., Galtier, N. (2009). The erratic mitochondrial
clock: variations of mutation rate, not population size, affect mtDNA
diversity across birds and mammals. BMC Ecology and Evolution , 9,
54. https://doi.org/10.1186/1471-2148-9-54
Niu, S. F., Wu, R. X., Zhai, Y., Zhang, H. R., Li Z. L., Liang, Z. B.,
& Chen, Y. H. (2019). Demographic history and population genetic
analysis of Decapterus maruadsi from the northern South China Sea
based on mitochondrial control region sequence. PeerJ , 7, e7953.
https://doi.org/10.7717/peerj.7953
Palumbi, S. R. (1994). Genetic divergence, reproductive isolation, and
marine speciation. Annual Review of Ecology and Systematics ,
25(1), 547-572. https://doi.org/10.1146/annurev.es.25.110194.002555
Rambaut, A., Drummond, A. J., Xie, D., Baele, G., & Suchard, M. A.
(2018). Posterior summarization in Bayesian phylogenetics using Tracer
1.7. Systematic Biology , 67, 901-904.
https://doi.org/10.1093/sysbio/syy032
Rogers, A. R., & Harpending, H. (1992). Population growth makes waves
in the distribution of pairwise genetic differences. Molecular
Biology and Evolution , 9(3), 552–569.
https://doi.org/10.1093/oxfordjournals.molbev.a040727
Roldan, M. I., Perrotta, G. R., Cortey, M., & Pla, C. (2000). Molecular
and morphologic approaches to discrimination of variability patterns in
chub mackerel, Scomber japonicus . Journal of Experimental
Marine Biology and Ecology , 253(1), 63-74.
https://doi.org/10.1016/s0022-0981(00)00244-6
Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D. L., Darling, A.,
Hohna, S., Larget, B., Liu, L., Suchard, M. A., & Huelsenbeck, J. P.
(2012). MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model
Choice Across a Large Model Space. Systematic Biology , 61,
539-542. https://doi.org/10.1093/ sysbio/sys029
Rozas, J., Ferrer-Mata, A., Sanchez-DelBarrio, J. C., Guirao-Librado,
P., Ramos-Onsins, S. E., & Sanchez-Garcia, A. (2017). DnaSP 6: DNA
Sequence Polymorphism Analysis of Large Data Sets. Molecular
Biology and Evolotion , 34(12), 3299-3302.
https://doi.org/10.1093/molbev/msx248
Schmitt, T., & Hewitt, G. M. (2004). The genetic pattern of population
threat and loss: a case study of butterflies. Molecular Ecology ,
13(1), 21-31. https://doi.org/10.1046/j.1365-294x.2004.02020.x
Schubart, C. P., Diesel, R., & Hedges, S. B. (1998). Rapid evolution to
terrestrial life in Jamaican crabs. Nature , 393, 363-365.
Shaklee, J. B., Tamaru, C. S., & Waples, R. S. (1982). Speciation and
evolution of marine fishes studied by the electrophoretic analysis of
proteins. Pacific Science , 36, 141-157.
https://www.researchgate.net/publication/29736245
Strathmann, R. R., Hughes, T. P., Kuris, A. M., Lindeman, K. C., Morgan,
S. G., Pandolfi, J. M., & Warner, R. R. (2002). Evolution of local
recruitment and its consequences for marine populations. Bulletin
of Marine Science , 70(1), 377-396.
Swindell, S. R., & Plasterer, T. N. (1997). SEQMAN. Contig assembly.Methods in Molecular Biology , 70, 75-89.
Tajima, F. (1989). Statistical method for testing the neutral mutation
hypothesis by DNA polymorphism. Genetics , 123(3), 585-595.
https://doi.org/10.1093/genetics/123.3.585
Tuncer, S., Aslan, H., & Bilecenoglu, M. (2008). First record of the
Lessepsian migrant Lagocephalus spadiceus (Tetraodontidae) in the
Sea of Marmara. Cybium , 32(4), 347-348.
https://www.researchgate.net/publication/235588605
Tuney, I. (2016). Molecular identification of puffer fishLagocephalus sceleratus (Gmelin 1789) and Lagocephalus
spadiceus (Richardson, 1845) from eastern mediterranean, Turkey.Fresenius Environmental Bulletin , 25(5), 1428-1436.
https://www.researchgate.net/publication/301621989
Vinas, J., Alvarado-Bremer, J. R., & Pla, C. (2010). Phylogeography and
phylogeny of the epineritic cosmopolitan bonitos of the genusSarda (Cuvier): inferred patterns of intra- and inter-oceanic
connectivity derived from nuclear and mitochondrial DNA data.Journal of Biogeography , 37(3), 557-570.
https://doi.org/10.1111/j.1365-2699.2009.02225.x
Wang, J., Tsang, L. M., & Dong Y. W. (2015). Causations of
phylogeographic barrier of some rocky shore species along the Chinese
coastline. BMC Ecology and Evolution , 15, 114.
https://doi.org/10.1186/s12862-015-0387-0
Wang, P. X. (1990). The ice-age China Sea: status and problems.Quaternary Sciences , 2, 111-124.
Wang, P. X., & Sun, X. J. (1994). Last glacial maximum in China:
Comparison between land and sea. Catena , 23, 341-353.
http://doi.org/10.1016/0341-8162(94)90077-9
Wright, S. (1951). The genetical structure of populations. Annals
of Eugenics , 15(1), 323-354.
https://doi.org/10.1111/j.1469-1809.1949.tb02451.x
Xu, L., Wang, X. H., Wang, L. G., Ning, J. J., Li, Y. F., Huang, D. L.,
Liu, S. S., & Du, F. Y. (2021). Threadfin Porgy (Evynnis
Cardinalis ) Haplotype Pattern and Genetic Structure in Beibu Gulf,
South China Sea. Frontiers in Environmental Science , 9, 726533.
https://doi.org/10.3389/fenvs.2021.726533
Yamaguchi, H., Nakaya, M., Kaneko, G., Yoneda, C., Mochizuki, T.,
Fukami, K., Ushio, H., & Watabe, S. (2013). Comparison in taste and
extractive components of boiled dorsal muscle and broth from half-smooth
golden puffer Lagocephalus spadiceus caught in Japan with those
of the same fish imported. Fisheries Science , 79(2), 327-334.
http://doi.org/10.1007/s12562-012-0585-2
Yang, J. Y., Wu, D. X., & Lin, X. P. (2008). On the dynamics of the
South China Sea Warm Current. Journal of Geophysical Research ,
113, C08003. https://doi.org/10.1029/2007JC004427
Yang, K., Lin, H., Liu, R., & Ding, S. X. (2022). Genetic Structure and
Demographic History of Yellow Grouper (Epinephelus awoara ) from
the Coast of Southeastern Mainland China, Inferred by Mitochondrial,
Nuclear and Microsatellite DNA Markers. Diversity , 14, 439.
https://doi.org/10.3390/d14060439
Yi, M. R., Hsu, K. C., Wang, J. X., Feng, B., Lin, H. D., & Yan, Y. R.
(2021). Genetic structure and diversity of the yellowbelly threadfin
bream Nemipterus bathybius in the northern South China Sea.Diversity-Basel , 13(7), 324. https://doi.org/10.3390/d13070324
Zhang, D., Gao, F. L., Jakovlic, I., Zou, H., Zhang, J., Li, W. X., &
Wang, G. T. (2020). PhyloSuite: An integrated and scalable desktop
platform for streamlined molecular sequence data management and
evolutionary phylogenetics studies. Molecular Ecology Resources ,
20(1), 348-355. https://doi.org/10.1111/1755-0998.13096
Zhang, J. B., Cai, Z. P., & Huang, L. M. (2006). Population genetic
structure of crimson snapper Lutjanus erythropterus in East Asia,
revealed by analysis of the mitochondrial control region. Ices
Journal of Marine Science , 63(4), 693-704.
https://doi.org/10.1016/j.icesjms.2006.01.004
Zink, R. M., & Barrowclough, G. F. (2008). Mitochondrial DNA under
siege in avian phylogeography. Molecular ecology , 17(9),
2107-2121. https://doi.org/10.1111/j.1365-294X.2008.03737.x