REFERENCES
Bao, Y. J., Qiu, J., Luo, Y.,
Rodriguez, F., & Qiu, H. J. (2021). The genetic variation landscape of
African swine fever virus reveals frequent positive selection and
adaptive flexibility. Transboundary and Emerging Diseases ,
doi:10.1111/tbed.14018
Bi, J., Zeng, S., Xiao, S., Chen, H.,
& Fang, L. (2012). Complete genome sequence of porcine epidemic
diarrhea virus strain AJ1102 isolated from a suckling piglet with acute
diarrhea in China. Journal of Virology, 86 (19), 10910-10911.
doi:10.1128/JVI.01919-12
Chang, C. Y., Cheng, I. C., Chang, Y.
C., Tsai, P. S., Lai, S. Y., Huang, Y. L., . . . Chang, H. W. (2019).
Identification of Neutralizing Monoclonal Antibodies Targeting Novel
Conformational Epitopes of the Porcine Epidemic Diarrhoea Virus Spike
Protein. Scientific Reports, 9 (1), 2529.
doi:10.1038/s41598-019-39844-5
Chang, S. H., Bae, J. L., Kang, T. J.,
Kim, J., Chung, G. H., Lim, C. W., . . . Jang, Y. S. (2002).
Identification of the epitope region capable of inducing neutralizing
antibodies against the porcine epidemic diarrhea virus. Molecules
and Cells, 14 (2), 295-299.
Chen, J., Liu, X., Shi, D., Shi, H.,
Zhang, X., & Feng, L. (2012). Complete genome sequence of a porcine
epidemic diarrhea virus variant. Journal of Virology, 86 (6),
3408. doi:10.1128/JVI.07150-11
Chen, J., Liu, X., Shi, D., Shi, H.,
Zhang, X., Li, C., . . . Feng, L. (2013). Detection and molecular
diversity of spike gene of porcine epidemic diarrhea virus in China.Viruses, 5 (10), 2601-2613. doi:10.3390/v5102601
Chen, N., Li, S., Zhou, R., Zhu, M.,
He, S., Ye, M., . . . Zhu, J. (2017). Two novel porcine epidemic
diarrhea virus (PEDV) recombinants from a natural recombinant and
distinct subtypes of PEDV variants. Virus Research, 242 , 90-95.
doi:10.1016/j.virusres.2017.09.013
de Nova, P. J. G., Cortey, M., Diaz,
I., Puente, H., Rubio, P., Martin, M., & Carvajal, A. (2020). A
retrospective study of porcine epidemic diarrhoea virus (PEDV) reveals
the presence of swine enteric coronavirus (SeCoV) since 1993 and the
recent introduction of a recombinant PEDV-SeCoV in Spain.Transboundary and Emerging Diseases, 67 (6), 2911-2922.
doi:10.1111/tbed.13666
Duarte, M., Tobler, K., Bridgen, A.,
Rasschaert, D., Ackermann, M., & Laude, H. (1994). Sequence analysis of
the porcine epidemic diarrhea virus genome between the nucleocapsid and
spike protein genes reveals a polymorphic ORF. Virology, 198 (2),
466-476. doi:10.1006/viro.1994.1058
Fan, B., Jiao, D., Zhang, R., Zhou,
J., Guo, R., Yu, Z., . . . Li, B. (2020). Origin and epidemic status of
porcine epidemic diarrhea virus variants in China. Transboundary
and Emerging Diseases, 67 (3), 1364-1370. doi:10.1111/tbed.13444
Gong, L., Li, J., Zhou, Q., Xu, Z.,
Chen, L., Zhang, Y., . . . Cao, Y. (2017). A New Bat-HKU2-like
Coronavirus in Swine, China, 2017. Emerging Infectious Diseases,
23 (9). doi:10.3201/eid2309.170915
Guo, J., Fang, L., Ye, X., Chen, J.,
Xu, S., Zhu, X., . . . Xiao, S. (2019). Evolutionary and genotypic
analyses of global porcine epidemic diarrhea virus strains.Transboundary and Emerging Diseases, 66 (1), 111-118.
doi:10.1111/tbed.12991
Hu, H., Jung, K., Vlasova, A. N.,
Chepngeno, J., Lu, Z., Wang, Q., & Saif, L. J. (2015). Isolation and
characterization of porcine deltacoronavirus from pigs with diarrhea in
the United States. Journal of Clinical Microbiology, 53 (5),
1537-1548. doi:10.1128/JCM.00031-15
Ji, Z., Shi, D., Shi, H., Wang, X.,
Chen, J., Liu, J., . . . Feng, L. (2021). A porcine epidemic diarrhea
virus strain with distinct characteristics of four amino acid insertion
in the COE region of spike protein. Veterinary Microbiology, 253 ,
108955. doi:10.1016/j.vetmic.2020.108955
Jung, K., Saif, L. J., & Wang, Q.
(2020). Porcine epidemic diarrhea virus (PEDV): An update on etiology,
transmission, pathogenesis, and prevention and control. Virus
Research, 286 , 198045. doi:10.1016/j.virusres.2020.198045
Kocherhans, R., Bridgen, A.,
Ackermann, M., & Tobler, K. (2001). Completion of the porcine epidemic
diarrhoea coronavirus (PEDV) genome sequence. Virus Genes, 23 (2),
137-144. doi:10.1023/a:1011831902219
Kong, N., Meng, Q., Jiao, Y., Wu, Y.,
Zuo, Y., Wang, H., . . . Shan, T. (2020). Identification of a novel
B-cell epitope in the spike protein of porcine epidemic diarrhea virus.Virology Journal, 17 (1), 46. doi:10.1186/s12985-020-01305-1
Kumar, S., Stecher, G., Li, M.,
Knyaz, C., & Tamura, K. (2018). MEGA X: Molecular Evolutionary Genetics
Analysis across Computing Platforms. Molecular Biology and
Evolution, 35 (6), 1547-1549. doi:10.1093/molbev/msy096
Letunic, I., & Bork, P. (2019).
Interactive Tree Of Life (iTOL) v4: recent updates and new developments.Nucleic Acids Research, 47 (W1), W256-W259. doi:10.1093/nar/gkz239
Li, B. X., Ge, J. W., & Li, Y. J.
(2007). Porcine aminopeptidase N is a functional receptor for the PEDV
coronavirus. Virology, 365 (1), 166-172.
doi:10.1016/j.virol.2007.03.031
Li, W., van Kuppeveld, F. J. M., He,
Q., Rottier, P. J. M., & Bosch, B. J. (2016). Cellular entry of the
porcine epidemic diarrhea virus. Virus Research, 226 , 117-127.
doi:10.1016/j.virusres.2016.05.031
Lin, C. M., Annamalai, T., Liu, X.,
Gao, X., Lu, Z., El-Tholoth, M., . . . Wang, Q. (2015). Experimental
infection of a US spike-insertion deletion porcine epidemic diarrhea
virus in conventional nursing piglets and cross-protection to the
original US PEDV infection. Veterinary Research, 46 , 134.
doi:10.1186/s13567-015-0278-9
Martin, D. P., Lemey, P., Lott, M.,
Moulton, V., Posada, D., & Lefeuvre, P. (2010). RDP3: a flexible and
fast computer program for analyzing recombination. Bioinformatics,
26 (19), 2462-2463. doi:10.1093/bioinformatics/btq467
Millet, J. K., & Whittaker, G. R.
(2015). Host cell proteases: Critical determinants of coronavirus
tropism and pathogenesis. Virus Research, 202 , 120-134.
doi:10.1016/j.virusres.2014.11.021
Okda, F. A., Lawson, S., Singrey, A.,
Nelson, J., Hain, K. S., Joshi, L. R., . . . Diel, D. G. (2017). The S2
glycoprotein subunit of porcine epidemic diarrhea virus contains
immunodominant neutralizing epitopes. Virology, 509 , 185-194.
doi:10.1016/j.virol.2017.06.013
Peng, Q., Fang, L., Ding, Z., Wang,
D., Peng, G., & Xiao, S. (2020). Rapid manipulation of the porcine
epidemic diarrhea virus genome by CRISPR/Cas9 technology. Journal
of Virological Methods, 276 , 113772. doi:10.1016/j.jviromet.2019.113772
Song, D., & Park, B. (2012). Porcine
epidemic diarrhoea virus: a comprehensive review of molecular
epidemiology, diagnosis, and vaccines. Virus Genes, 44 (2),
167-175. doi:10.1007/s11262-012-0713-1
Stadler, J., Zoels, S., Fux, R.,
Hanke, D., Pohlmann, A., Blome, S., . . . Ladinig, A. (2015). Emergence
of porcine epidemic diarrhea virus in southern Germany. Bmc
Veterinary Research, 11 , 142. doi:10.1186/s12917-015-0454-1
Su, M., Li, C., Qi, S., Yang, D.,
Jiang, N., Yin, B., . . . Sun, D. (2020). A molecular epidemiological
investigation of PEDV in China: Characterization of co-infection and
genetic diversity of S1-based genes. Transboundary and Emerging
Diseases, 67 (3), 1129-1140. doi:10.1111/tbed.13439
Sun, D., Feng, L., Shi, H., Chen, J.,
Cui, X., Chen, H., . . . Tong, G. (2008). Identification of two novel B
cell epitopes on porcine epidemic diarrhea virus spike protein.Veterinary Microbiology, 131 (1-2), 73-81.
doi:10.1016/j.vetmic.2008.02.022
Suzuki, T., Terada, Y., Enjuanes, L.,
Ohashi, S., & Kamitani, W. (2018). S1 Subunit of Spike Protein from a
Current Highly Virulent Porcine Epidemic Diarrhea Virus Is an Important
Determinant of Virulence in Piglets. Viruses, 10 (9).
doi:10.3390/v10090467
Tan, L., Li, Y., He, J., Hu, Y., Cai,
X., Liu, W., . . . Wang, A. (2020). Epidemic and genetic
characterization of porcine epidemic diarrhea virus strains circulating
in the regions around Hunan, China, during 2017-2018. Archives of
Virology, 165 (4), 877-889. doi:10.1007/s00705-020-04532-7
Van Diep, N., Choijookhuu, N., Fuke,
N., Myint, O., Izzati, U. Z., Suwanruengsri, M., . . . Yamaguchi, R.
(2020). New tropisms of porcine epidemic diarrhoea virus (PEDV) in pigs
naturally coinfected by variants bearing large deletions in the spike
(S) protein and PEDVs possessing an intact S protein.Transboundary and Emerging Diseases, 67 (6), 2589-2601.
doi:10.1111/tbed.13607
Vlasova, A. N., Marthaler, D., Wang,
Q., Culhane, M. R., Rossow, K. D., Rovira, A., . . . Saif, L. J. (2014).
Distinct characteristics and complex evolution of PEDV strains, North
America, May 2013-February 2014. Emerging Infectious Diseases,
20 (10), 1620-1628. doi:10.3201/eid2010.140491
Wang, D., Fang, L., & Xiao, S.
(2016). Porcine epidemic diarrhea in China. Virus Research, 226 ,
7-13. doi:10.1016/j.virusres.2016.05.026
Wang, L., Byrum, B., & Zhang, Y.
(2014a). Detection and genetic characterization of deltacoronavirus in
pigs, Ohio, USA, 2014. Emerging Infectious Diseases, 20 (7),
1227-1230. doi:10.3201/eid2007.140296
Wang, L., Byrum, B., & Zhang, Y.
(2014b). New variant of porcine epidemic diarrhea virus, United States,
2014. Emerging Infectious Diseases, 20 (5), 917-919.
doi:10.3201/eid2005.140195
Wang, Q., Vlasova, A. N., Kenney, S.
P., & Saif, L. J. (2019). Emerging and re-emerging coronaviruses in
pigs. Current Opinion in Virology, 34 , 39-49.
doi:10.1016/j.coviro.2018.12.001
Wang, X., Chen, J., Shi, D., Shi, H.,
Zhang, X., Yuan, J., . . . Feng, L. (2016). Immunogenicity and antigenic
relationships among spike proteins of porcine epidemic diarrhea virus
subtypes G1 and G2. Archives of Virology, 161 (3), 537-547.
doi:10.1007/s00705-015-2694-6
Woo, P. C., Lau, S. K., Yip, C. C.,
Huang, Y., Tsoi, H. W., Chan, K. H., & Yuen, K. Y. (2006). Comparative
analysis of 22 coronavirus HKU1 genomes reveals a novel genotype and
evidence of natural recombination in coronavirus HKU1. Journal of
Virology, 80 (14), 7136-7145. doi:10.1128/JVI.00509-06
Wood, E. N. (1977). An apparently new
syndrome of porcine epidemic diarrhoea. Veterinary record,
100 (12), 243-244. doi:10.1136/vr.100.12.243
Yang, X., Huo, J. Y., Chen, L.,
Zheng, F. M., Chang, H. T., Zhao, J., . . . Wang, C. Q. (2013). Genetic
variation analysis of reemerging porcine epidemic diarrhea virus
prevailing in central China from 2010 to 2011. Virus Genes,
46 (2), 337-344. doi:10.1007/s11262-012-0867-x
Zhang, H., Han, F., Yan, X., Liu, L.,
Shu, X., & Hu, H. (2021). Prevalence and phylogenetic analysis of spike
gene of porcine epidemic diarrhea virus in Henan province, China in
2015-2019. Infection, Genetics and Evolution, 88 , 104709.
doi:10.1016/j.meegid.2021.104709
Zhang, J., Yim-Im, W., Chen, Q.,
Zheng, Y., Schumacher, L., Huang, H., . . . Li, G. (2018).
Identification of porcine epidemic diarrhea virus variant with a large
spike gene deletion from a clinical swine sample in the United States.Virus Genes, 54 (2), 323-327. doi:10.1007/s11262-018-1542-7
Zhang, Q., Liu, X., Fang, Y., Zhou,
P., Wang, Y., & Zhang, Y. (2017). Detection and phylogenetic analyses
of spike genes in porcine epidemic diarrhea virus strains circulating in
China in 2016-2017. Virology Journal, 14 (1), 194.
doi:10.1186/s12985-017-0860-z