Results

Database search

The results for the database search using MSFragger are summarized in Table 1. Sample A-1112042 had slightly more PSMs compared to sample A11-12043. The PSMs resulted in approximately the same number of identified peptides for both samples and the same number of identified proteins. All detailed results including p-values can be found in Supplementing Information 1.
Table 1 Summarized results of the MSFragger database search on duplicates of a UPS2-kit.