Title

Establishing A Comprehensive Workflow for Extracting MS1 Isotope Distributions in LC-MS/MS Proteomics

Full names

Vilenne Frédérique1, 2
Agten Annelies1
Dr. Appeltans Simon1
Dr. Ertaylan Gökhan2
Prof. Dr. Valkenborg Dirk1
1: Data Science Institute, Hasselt University, Diepenbeek, Belgium
2: Health, Flemish Institute for Technological Research (VITO), Mol, Belgium

Name and title for contact person

Vilenne Frédérique
Universiteit Hasselt – Campus Diepenbeek, Agoralaan Gebouw D, B-3590 Diepenbeek, Office E101
Frederique.vilenne@uhasselt.be

Abbreviations

DDA = Data Dependent Acquisition
DL = Deep Learning
ML = Machine Learning
ppm = parts per million
PSM = peptide spectral match
PRIDE = Proteomics Identifications Database
UPS = Universal Proteomics Standard
XIC = Extracted ion chromatograms

Keywords

Benchmark dataset
Deep learning
Machine learning
Mass Spectrometry
MS1

Total number of words

4.238 words in total