Region
Length
Ancestral variants
Omicron BA.2-like Omicron BA.2-like
Other Omicrons
Other Omicrons
Diff FDR Diff FDR
NSP4
1500
962
464
< 0.0001
1
0.1127
Spike
3822
709
21
< 0.0001
20
< 0.0001
NSP15
1038
376
21
< 0.0001
11
< 0.0001
NSP9
339
1518
6
< 0.0001
7
< 0.0001
NSP3
5835
467
4
< 0.0001
0
0.7554
NSP6
870
1162
3
< 0.0001
-3
< 0.0001
NSP12
2769
356
1
0.1789
2
< 0.0001
NSP14
1581
1781
1
0.8104
2
0.0129
N
1260
683
1
0.4540
-1
0.0123
NS7a
366
223
0
0.5782
0
0.0458
NSP13
1803
1659
0
< 0.0001
0
< 0.0001
NS9b
294
444
0
0.9704
-4
0.0040
E
228
2338
-2
0.1030
-2
0.0486
NSP2
1914
455
-5
0.3511
3
0.0015
NS9c
222
2474
-5
0.1000
-7
0.0166
NS3
828
243
-5
< 0.0001
0
0.0002
NSP1
540
498
-7
< 0.0001
-4
0.0001
3P
370
188
-9
< 0.0001
0
0.9165
RNA 29903 744
27
< 0.0001
3
< 0.0001