References
Abdul Rahman, N., Parks, D. H., Vanwonterghem, I., Morrison, M., Tyson,
G. W., & Hugenholtz, P. (2016). A phylogenomic analysis of the
bacterial phylum Fibrobacteres. Frontiers in microbiology, 6, 1469.
Amato, K. R., Leigh, S. R., Kent, A., Mackie, R. I., Yeoman, C. J.,
Stumpf, R. M., Wilson, B. A., Nelson, K. E., White, B. A., & Garber, P.
A. (2015). The gut microbiota appears to compensate for seasonal diet
variation in the wild black howler monkey (Alouatta pigra ).
Microbial ecology, 69(2), 434-443.
Anderson, M. J. (2001). A new method for non‐parametric multivariate
analysis of variance. Austral ecology, 26(1), 32-46.
Bai, H., Zhao, X., Ma, L., & Xi, L. (2007). Determination on the
content of nutritional ingredient in the fruit of Capparis
spinosa . Acta Agriculturae Boreali-occidentalis Sinica, 16(5): 211-213,
226.
Bao, Q., Shen, X., Qian, L., Gong, C., Nie, M., & Dong, Y.
(2016). Anti-diabetic activities of
catalpol in db/db mice. The Korean Journal of Physiology &
Pharmacology, 20(2), 153-160.
Belzer, C., & De Vos, W. M. (2012). Microbes inside—from diversity to
function: the case of Akkermansia . The ISME journal, 6(8),
1449-1458.
Biddle, A., Stewart, L., Blanchard, J., & Leschine, S. (2013).
Untangling the genetic basis of fibrolytic specialization by
Lachnospiraceae and Ruminococcaceae in diverse gut communities.
Diversity, 5(3), 627-640.
Campos, P., Guivernau, M., Prenafeta-Boldú, F. X., & Cardona, L.
(2018). Fast acquisition of a polysaccharide fermenting gut microbiome
by juvenile green turtles Chelonia mydas after settlement in
coastal habitats. Microbiome, 6(1), 1-11.
Chang, D.-E., Smalley, D. J., Tucker, D. L., Leatham, M. P., Norris, W.
E., Stevenson, S. J., Anderson, A. B., Grissom, J. E., Laux, D. C., &
Cohen, P. S. (2004). Carbon nutrition of Escherichia coli in the mouse
intestine. Proceedings of the National Academy of Sciences, 101(19),
7427-7432.
Choudhary, C., Weinert, B. T., Nishida, Y., Verdin, E., & Mann, M.
(2014). The growing landscape of lysine acetylation links metabolism and
cell signalling. Nature reviews Molecular cell biology, 15(8), 536-550.
Clarke, S. F., Murphy, E. F., Nilaweera, K., Ross, P. R., Shanahan, F.,
O’Toole, P. W., & Cotter, P. D. (2012). The gut microbiota and its
relationship to diet and obesity: new insights. Gut microbes, 3(3),
186-202.
Colston, T. J., & Jackson, C. R. (2016). Microbiome evolution along
divergent branches of the vertebrate tree of life: what is known and
unknown. Molecular ecology, 25(16), 3776-3800.
Edgar, R. C. (2013). UPARSE: highly accurate OTU sequences from
microbial amplicon reads. Nature methods, 10(10), 996-998.
Egerton, S., Culloty, S., Whooley, J., Stanton, C., & Ross, R. P.
(2018). The gut microbiota of marine fish. Frontiers in microbiology, 9,
873.
Fan, C., Zhang, L., Jia, S., Tang, X., Fu, H., Li, W., Liu, C., Zhang,
H., Cheng, Q., & Zhang, Y. (2022). Seasonal variations in the
composition and functional profiles of gut microbiota reflect dietary
changes in plateau pikas. Integrative
Zoology, 17(3), 379-395.
Feng, W., Ao, H., & Peng, C. (2018). Gut microbiota, short-chain fatty
acids, and herbal medicines. Frontiers in pharmacology, 9, 1354.
Flint, H. J., Duncan, S. H., Scott, K. P., & Louis, P. (2015). Links
between diet, gut microbiota composition and gut metabolism. Proceedings
of the Nutrition Society, 74(1), 13-22.
Gomez, A., Rothman, J. M., Petrzelkova, K., Yeoman, C. J., Vlckova, K.,
Umaña, J. D., Carr, M., Modry, D., Todd, A., & Torralba, M. (2016).
Temporal variation selects for diet–microbe co-metabolic traits in the
gut of Gorilla spp . The ISME journal, 10(2), 514-526.
Gong, L., Liu, B., Wu, H., Feng, J., & Jiang, T. (2021). Seasonal
Dietary Shifts Alter the Gut Microbiota of Avivorous Bats: Implication
for Adaptation to Energy Harvest and Nutritional Utilization. Msphere,
6(4), e00467-00421.
Grond, K., Sandercock, B. K., Jumpponen, A., & Zeglin, L. H. (2018).
The avian gut microbiota: community, physiology and function in wild
birds. Journal of Avian Biology, 49(11), e01788.
Guisan, A., Petitpierre, B., Broennimann, O., Daehler, C., & Kueffer,
C. (2014). Unifying niche shift studies: insights from biological
invasions. Trends in ecology & evolution, 29(5), 260-269.
Hale, V. L., Tan, C. L., Niu, K., Yang, Y., Zhang, Q., Knight, R., &
Amato, K. R. (2019). Gut microbiota in wild and captive Guizhou
snub‐nosed monkeys, Rhinopithecus brelichi . American Journal of
Primatology, 81(10-11), e22989.
Hallen, A., Jamie, J. F., & Cooper, A. J. (2013). Lysine metabolism in
mammalian brain: an update on the importance of recent discoveries.
Amino acids, 45(6), 1249-1272.
Hua, Y., Cao, H., Wang, J., He, F., & Jiang, G. (2020). Gut microbiota
and fecal metabolites in captive and wild North China leopard
(Panthera pardus japonensis ) by comparsion using 16 s rRNA gene
sequencing and LC/MS-based metabolomics. BMC veterinary research, 16(1),
1-11.
Huang, C., & Liao, W. (2021). Seasonal variation in gut microbiota
related to diet in Fejervarya limnocharis . Animals, 11(5), 1393.
Jiang, H.-Y., Ma, J.-E., Li, J., Zhang, X.-J., Li, L.-M., He, N., Liu,
H.-Y., Luo, S.-Y., Wu, Z.-J., & Han, R.-C. (2017). Diets alter the gut
microbiome of crocodile lizards. Frontiers in microbiology, 8, 2073.
Kaiser, N., Cerasi, E., & Leibowitz, G. (2012). Diet-induced diabetes
in the sand rat (Psammomys obesus ). Animal Models in Diabetes
Research, 89-102.
Kanehisa, M. (2019). Toward understanding the origin and evolution of
cellular organisms. Protein Science, 28(11), 1947-1951.
Kartzinel, T. R., Hsing, J. C., Musili, P. M., Brown, B. R., & Pringle,
R. M. (2019). Covariation of diet and gut microbiome in African
megafauna. Proceedings of the National Academy of Sciences, 116(47),
23588-23593.
Kim, M., & Benayoun, B. A. (2020). The microbiome: an emerging key
player in aging and longevity. Translational medicine of aging, 4,
103-116.
Kohl, K. D., Amaya, J., Passement, C. A., Dearing, M. D., & McCue, M.
D. (2014). Unique and shared responses of the gut microbiota to
prolonged fasting: a comparative study across five classes of vertebrate
hosts. FEMS microbiology ecology, 90(3), 883-894.
Kohl, K. D., Brun, A., Magallanes, M., Brinkerhoff, J., Laspiur, A.,
Acosta, J. C., Bordenstein, S. R., & Caviedes-Vidal, E. (2016).
Physiological and microbial adjustments to diet quality permit
facultative herbivory in an omnivorous lizard. Journal of Experimental
Biology, 219(12), 1903-1912.
Kohl, K. D., Cary, T. L., Karasov, W. H., & Dearing, M. D. (2013).
Restructuring of the amphibian gut microbiota through metamorphosis.
Environmental microbiology reports, 5(6), 899-903.
Le Bouguénec, C., & Schouler, C. (2011). Sugar metabolism, an
additional virulence factor in enterobacteria. International Journal of
Medical Microbiology, 301(1), 1-6.
Li, H., Yu, Q., Li, T., Shao, L., Su, M., Zhou, H., & Qu, J. (2020).
Rumen microbiome and metabolome of Tibetan Sheep (Ovis aries )
reflect animal age and nutritional requirement. Frontiers in Veterinary
Science, 7, 609.
Li, W., Song, Y., & Shi, L. (2010). Age determination ofTeratoscincus roborowskii (Gekkonidae) by skeletochronology. Chin
J Zool, 45, 79-86.
Liu, P.Y., Cheng, A.C., Huang, S.W., Chang, H.W., Oshida, T., & Yu,
H.T. (2019). Variations in gut microbiota of Siberian flying squirrels
correspond to seasonal phenological changes in their Hokkaido subarctic
forest ecosystem. Microbial ecology, 78(1), 223-231.
Liu, Y., Song, Y., Li, W., & Shi, L. (2010). Sexual dimorphism in head
and body size of Teratoscincus roborowskii and its food habits in
different seasons. Chin J Ecol, 29(2), 333-338.
Ma, T., Liu, T., Xie, P., Jiang, S., Yi, W., Dai, P., & Guo, X. (2020).
UPLC-MS-based urine nontargeted metabolic profiling identifies
dysregulation of pantothenate and CoA biosynthesis pathway in diabetic
kidney disease. Life Sciences, 258, 118160.
MacLeod, K. J., Kohl, K. D., Trevelline, B. K., & Langkilde, T. (2022).
Context‐dependent effects of glucocorticoids on the lizard gut
microbiome. Molecular ecology, 31(1), 185-196.
Marshall, T. J., Dick, M. F., & Guglielmo, C. G. (2016). Seasonal
dietary shifting in yellow-rumped warblers is unrelated to macronutrient
targets. Comparative Biochemistry and Physiology Part A: Molecular &
Integrative Physiology, 192, 57-63.
Maurice, C. F., CL Knowles, S., Ladau, J., Pollard, K. S., Fenton, A.,
Pedersen, A. B., & Turnbaugh, P. J. (2015). Marked seasonal variation
in the wild mouse gut microbiota. The ISME journal, 9(11), 2423-2434.
McFall-Ngai, M., Hadfield, M. G., Bosch, T. C., Carey, H. V.,
Domazet-Lošo, T., Douglas, A. E., Dubilier, N., Eberl, G., Fukami, T.,
& Gilbert, S. F. (2013). Animals in a bacterial world, a new imperative
for the life sciences. Proceedings of the National Academy of Sciences,
110(9), 3229-3236.
Moeller, A. H., Ivey, K., Cornwall, M. B., Herr, K., Rede, J., Taylor,
E. N., & Gunderson, A. R. (2020). The lizard gut microbiome changes
with temperature and is associated with heat tolerance. Applied and
environmental microbiology, 86(17), e01181-01120.
Montoya-Ciriaco, N., Gómez-Acata, S., Muñoz-Arenas, L. C., Dendooven,
L., Estrada-Torres, A., Díaz de la Vega-Pérez, A. H., & Navarro-Noya,
Y. E. (2020). Dietary effects on gut microbiota of the mesquite lizardSceloporus grammicus (Wiegmann, 1828) across different altitudes.
Microbiome, 8(1), 1-19.
Naya, D. E., Veloso, C., Sabat, P., & Bozinovic, F. (2010). Seasonal
flexibility in organ size in the Andean lizard Liolaemus
moradoensis . Journal of Morphology, 271(12), 1440-1445.
Oksanen, J., Blanchet, F. G., Kindt, R., Legendre, P., Minchin, P.,
O’hara, R., Simpson, G., Solymos, P., Stevens, M. H. H., & Wagner, H.
(2013). Community ecology package. R package version, 2(0), 321-326.
Pianka, E. R., & Vitt, L. J. (2003). Lizards: windows to the evolution
of diversity (Vol. 5). Univ of California Press.
Prehn-Kristensen, A., Zimmermann, A., Tittmann, L., Lieb, W., Schreiber,
S., Baving, L., & Fischer, A. (2018). Reduced microbiome alpha
diversity in young patients with ADHD. Plos one, 13(7), e0200728.
Rios-Covian, D., Salazar, N., Gueimonde, M., & de Los Reyes-Gavilan, C.
G. (2017). Shaping the metabolism of intestinal Bacteroides population
through diet to improve human health. Frontiers in microbiology, 8, 376.
Rivera-Chávez, F., Lopez, C. A., Zhang, L. F., García-Pastor, L.,
Chávez-Arroyo, A., Lokken, K. L., Tsolis, R. M., Winter, S. E., &
Bäumler, A. J. (2016). Energy taxis toward host-derived nitrate supports
a Salmonella pathogenicity island 1-independent mechanism of
invasion. MBio, 7(4), e00960-00916.
Robbins, C. T., Lopez-Alfaro, C., Rode, K. D., Tøien, Ø., & Nelson, O.
L. (2012). Hibernation and seasonal fasting in bears: the energetic
costs and consequences for polar bears. Journal of Mammalogy, 93(6),
1493-1503.
Schloss, P. D., Gevers, D., & Westcott, S. L. (2011). Reducing the
effects of PCR amplification and sequencing artifacts on 16S rRNA-based
studies. Plos one, 6(12), e27310.
Segata, N., Izard, J., Waldron, L., Gevers, D., Miropolsky, L., Garrett,
W. S., & Huttenhower, C. (2011). Metagenomic biomarker discovery and
explanation. Genome biology, 12(6), 1-18.
Shealy, N. G., Yoo, W., & Byndloss, M. X. (2021). Colonization
resistance: metabolic warfare as a strategy against pathogenic
Enterobacteriaceae. Current Opinion in Microbiology, 64, 82-90.
Shi, L., Yang, J., Hou, M., Zhao, H., Dong, B., Xiong, J., Wang, X., &
Wang, X. (2007). Herpetological surveys of Xinjiang Uygur autonomous
region. Sichuan Journal of Zoology, 26(4), 812-818.
Shi, L., Zhou, Y., & Yuan, H. (2002). Reptile fauna and zoogeographic
division of Xinjiang Uygur Autonomous Region. Sichuan Journal of
Zoology, 21(3), 152-157.
Sommer, F., & Bäckhed, F. (2013). The gut microbiota—masters of host
development and physiology. Nature reviews microbiology, 11(4), 227-238.
Sommer, F., Ståhlman, M., Ilkayeva, O., Arnemo, J. M., Kindberg, J.,
Josefsson, J., Newgard, C. B., Fröbert, O., & Bäckhed, F. (2016). The
gut microbiota modulates energy metabolism in the hibernating brown bearUrsus arctos . Cell reports, 14(7), 1655-1661.
Song, Y., Liu, Y., Lin, Y., Liang, T., & Shi, L. (2017). Burrow
characteristics and microhabitat use of the Turpan Wonder GeckoTeratoscincus roborowskii (Squamata, Gekkonidae). Asian Herpetol
Res, 8, 61-69.
Song, Y., Zhao, H., & Shi, L. (2009). Daily activity rhythm and its
affecting environmental factors of Teratoscincus roborowskii . J
Xinj Agri Univ, 32, 22-25.
Soriano, E. L., Ramírez, D. T., Araujo, D. R., Gómez-Gil, B., Castro, L.
I., & Sánchez, C. G. (2018). Effect of temperature and dietary lipid
proportion on gut microbiota in yellowtail kingfish Seriola
lalandi juveniles . Aquaculture, 497, 269-277.
Speakman, J. R. (2008). The physiological costs of reproduction in small
mammals. Philosophical Transactions of the Royal Society B: Biological
Sciences, 363(1490), 375-398.
Suzuki, T. A., & Worobey, M. (2014). Geographical variation of human
gut microbial composition. Biology letters, 10(2), 20131037.
Tang, G.-S., Liang, X.-X., Yang, M.-Y., Wang, T.-T., Chen, J.-P., Du,
W.-G., Li, H., & Sun, B.-J. (2020). Captivity influences gut microbiota
in crocodile lizards (Shinisaurus crocodilurus ). Frontiers in
microbiology, 11, 550.
Tang, K.-Y., Wang, Z.-W., Wan, Q.-H., & Fang, S.-G. (2019).
Metagenomics reveals seasonal functional adaptation of the gut
microbiome to host feeding and fasting in the Chinese alligator.
Frontiers in microbiology, 10, 2409.
Thévenot, E. A., Roux, A., Xu, Y., Ezan, E., & Junot, C. (2015).
Analysis of the human adult urinary metabolome variations with age, body
mass index, and gender by implementing a comprehensive workflow for
univariate and OPLS statistical analyses. Journal of proteome research,
14(8), 3322-3335.
Tran, H., McConville, M., & Loukopoulos, P. (2020). Metabolomics in the
study of spontaneous animal diseases. Journal of Veterinary Diagnostic
Investigation, 32(5), 635-647.
Turnbaugh, P. J., Ley, R. E., Mahowald, M. A., Magrini, V., Mardis, E.
R., & Gordon, J. I. (2006). An obesity-associated gut microbiome with
increased capacity for energy harvest. nature, 444(7122), 1027-1031.
Turnbaugh, P. J., Ridaura, V. K., Faith, J. J., Rey, F. E., Knight, R.,
& Gordon, J. I. (2009). The effect of diet on the human gut microbiome:
a metagenomic analysis in humanized gnotobiotic mice. Science
translational medicine, 1(6), 6ra14-16ra14.
Vacca, M., Celano, G., Calabrese, F. M., Portincasa, P., Gobbetti, M.,
& De Angelis, M. (2020). The controversial role of human gut
lachnospiraceae. Microorganisms, 8(4), 573.
Wang, A. R., Ran, C., Ringø, E., & Zhou, Z. G. (2018). Progress in fish
gastrointestinal microbiota research. Reviews in Aquaculture, 10(3),
626-640.
Wang, H.Y., Zhao, J.G., & Zhang, Y.Q. (2020). The flavonoid-rich
ethanolic extract from the green cocoon shell of silkworm has excellent
antioxidation, glucosidase inhibition, and cell protective effects in
vitro. Food & Nutrition Research, 64.
Werner, Y., Okada, S., Ota, H., Perry, G., & Tokunaga, S. (1997).
Varied and fluctuating foraging modes in nocturnal lizards of the family
Gekkonidae. Asiatic Herpetological Research, 7, 153-165.
Wu, Q., Wang, X., Ding, Y., Hu, Y., Nie, Y., Wei, W., Ma, S., Yan, L.,
Zhu, L., & Wei, F. (2017). Seasonal variation in nutrient utilization
shapes gut microbiome structure and function in wild giant pandas.
Proceedings of the Royal Society B: Biological Sciences, 284(1862),
20170955.
Xiao, G., Liu, S., Xiao, Y., Zhu, Y., Zhao, H., Li, A., Li, Z., & Feng,
J. (2019). Seasonal changes in gut microbiota diversity and composition
in the greater horseshoe bat. Frontiers in microbiology, 10, 2247.
Yang, Y., Lin, Y., & Shi, L. (2021). The effect of lizards on the
dispersal and germination of Capparis spinosa (Capparaceae). Plos
one, 16(2), e0247585.
Zhang, W., Li, N., Tang, X., Liu, N., & Zhao, W. (2018). Changes in
intestinal microbiota across an altitudinal gradient in the lizardPhrynocephalus vlangalii . Ecology and evolution, 8(9), 4695-4703.
Zhao, J., Yao, Y., Li, D., Xu, H., Wu, J., Wen, A., Xie, M., Ni, Q.,
Zhang, M., & Peng, G. (2018). Characterization of the gut microbiota in
six geographical populations of Chinese rhesus macaques (Macaca
mulatta ), implying an adaptation to high-altitude environment.
Microbial ecology, 76(2), 565-577.
Zhou, J., Zhao, Y. T., Dai, Y. Y., Jiang, Y. J., Lin, L. H., Li, H., Li,
P., Qu, Y. F., & Ji, X. (2020). Captivity affects diversity, abundance,
and functional pathways of gut microbiota in the northern grass lizard“ . MicrobiologyOpen, 9(9), e1095.
Zhou, L., Liang, T., & Shi, L. (2019). Amphibian and Reptilian
Chorotypes in the Arid Land of Central Asia and Their Determinants.
Scientific reports, 9(1), 1-13.
Zierer, J., Jackson, M. A., Kastenmüller, G., Mangino, M., Long, T.,
Telenti, A., Mohney, R. P., Small, K. S., Bell, J. T., & Steves, C. J.
(2018). The fecal metabolome as a functional readout of the gut
microbiome. Nature genetics, 50(6), 790-795.