2.2.5.2 Taxonomy inference
Sequence taxonomy is inferred using DIAMOND blastx or blastp via the
user-specified protein database and the option parameters specified in
the vAMPirus configuration file. The taxonomy process produces several
files that are stored within a DIAMOND specific directory: 1. Unmodified
DIAMOND output file, 2. fasta file of taxonomy assignments within the
sequence headers, and 3. Results summary files (phyloseq taxonomy file,
tab-separated summary file, and summary table of the abundance of
specific hits). Taxonomy inference results are visualized in the Analyze
report as a donut plot.