Reilly Jackson

and 5 more

Reilly T. Jackson1*, Tamika J. Lunn1, Isabella K. DeAnglis1, Joseph G. Ogola2, Paul W. Webala3, Kristian M. Forbes1Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas, USADepartment of Medical Microbiology, University of Nairobi, Nairobi, KenyaDepartment of Forestry and Wildlife Management, Maasai Mara University, Narok, Kenya*Correspondence author: [email protected] use of domestic spaces by humans and wildlife is little understood, despite global ubiquity, and can create an interface for human exposure to wildlife pathogens. Bats are associated with several pathogens that can spillover and cause disease in humans and, due to loss of natural habitat and urbanization, are increasingly using anthropogenic structures for roosting. The purpose of this study was to characterize human interactions with bats in shared buildings to assess potential for exposure risk to bat pathogens.We surveyed 102 people living and working in buildings used as bat roots in rural Kenya between 2021 and 2023. Based on responses, we characterized and quantified the timing, intensity, and frequency of human-bat interactions occurring in this common domestic setting.Survey respondents reported living with bats in buildings year-round, with cohabitation occurring for at least 10 years in 38% of cases. Human contact with bats occurred through direct and indirect routes, including exposure to excrement (90% of respondents), and direct touching of bats (39% of respondents). Indirect contacts most often occurred daily and direct contacts most often occurred yearly. Domestic animal consumption of bats was also reported (16% respondents).Synthesis and applications : We demonstrate that shared building use by bats and humans in rural Kenya leads to prolonged, frequent, and sometimes intense interactions between bats and humans, consistent with exposure interfaces that can facilitate pathogen spillover. Identifying and understanding the settings and practices that may lead to zoonotic pathogen spillover is of great global importance for developing countermeasures, and this study establishes bat roosts in anthropogenic structures as such a setting.KEYWORDSAfrica, Chiroptera, emerging infectious disease, human-wildlife interaction, spillover, wildlife conflict, zoonosisINTRODUCTIONEmerging infectious diseases (EIDs) are a significant threat to global health and security, as demonstrated by the recent COVID-19 pandemic and Mpox disease outbreak (Morens and Fauci 2013, Wang et al. 2022, Zumla et al. 2022). Most EIDs have zoonotic origins and emerge in humans via spillover of pathogens from animals, often wildlife (Jones et al. 2008). These risks are exacerbated by growing human populations and conversion of natural lands to anthropogenic regions, which increase human contacts with wildlife and exposure to their pathogens (Woolhouse and Gowtage-Sequeria 2005, Jones et al. 2008, Gottdenker et al. 2014).Settings and practices that lead to pathogen spillover are little understood but of great importance for informing outbreak mitigation strategies. In lieu of direct knowledge on pathogen exposure, which is extremely difficult to identify from wild animals, characterization of human-wildlife contact can be used to infer exposure risk. Identifying exposure settings has primarily focused on direct contact between humans and wildlife, largely in the form of wildlife hunting and markets for the sale of live animals (Karesh et al. 2005, Mossoun et al. 2015, Keatts et al. 2021, Nawtaisong et al. 2022). For example, wildlife consumption and associated handling and butchering creates human contact with wildlife viscera and bodily fluids, which can facilitate spillover of their pathogens (Wolfe et al. 2005). However, contacts between humans and wildlife occur across numerous settings outside of wildlife trade and consumption and can result in human exposure to wildlife pathogens (Plowright et al. 2017). Other settings and practices that promote contact between wildlife and humans have received far less focus despite the importance of their characterization to mitigating zoonotic pathogen spillover.Wildlife often share spaces with humans and domestic animals, especially in the Global South, where humans and wildlife coexist closely in developing landscapes and EID risk is high (Seoraj-Pillai and Pillai 2016, Allen et al. 2017). Studies have reported many communities struggling to manage small mammal incursion into buildings (Salmon-Mulanovich et al. 2016, Doty et al. 2017, Balčiauskas and Balčiauskiene 2020). The presence of mammals in these spaces can create opportunities for human and domestic animal contact with wildlife and their excreta, potentially exposing them to wildlife-borne pathogens (Ogola et al. 2021). Despite the risk, characterization and quantification of contacts within buildings, where people may spend significant portions of their lives, is lacking.Bats can harbor zoonotic pathogens that may be shed in excreta and bodily fluids (eg., feces, urine, saliva, blood, etc.; Mildenstein et al. 2016, Waruhiu et al. 2017). Several bat-borne viruses have emerged in humans after transmission from bats via indirect contact with bat excreta or direct contact with bat bodily fluids (Belotto et al. 2005, Epstein et al. 2006, Towner et al. 2009, Eby et al. 2023). Domestic animals can also be exposed to these pathogens after contact with bats excreta and fluids (Marsh and Wang 2004). In developing settings, anthropogenic structures, like family homes, places of worship, and schools, can be highly permeable to bats, and with ongoing habitat loss bats are increasingly using these buildings as roosts (Russo and Ancillotto 2015, Voigt et al. 2016). Few options exist for people to safely manage bat use of their buildings, and this provides numerous opportunities for human-bat contact and conflict. However, detailed characterization of how humans contact bats and their excreta in relation to pathogen exposure risk in shared spaces is lacking and requires attention.We investigated human-bat interactions in anthropogenic structures in rural south-eastern Kenya to characterize and quantify forms of contact that could lead to human exposure to bat pathogens. Bats are known to roost frequently in buildings simultaneously used by humans in this region (Musila et al. 2018, Jackson et al. 2023, Lunn et al. 2023) and this area has been forecasted as a hotspot for zoonotic pathogen emergence where surveillance and mitigation efforts are needed (Allen et al. 2017). By understanding these contacts and their potential to facilitate pathogen exposure, we can better identify human health risks in this interface and provide data necessary to mitigate risks.METHODSThis study was conducted in Taita-Taveta County, Kenya. The most recent 2019 population estimate of Taita-Taveta County was 340,671 people in 2019 (Kenya National Bureau of Statistics), with a 1.8% annual increase in population over the preceding 10 years. Almost three-quarters of the population is considered rural, although urbanization and deforestation are increasing substantially in the region (Platts et al. 2011, Nyongesa et al. 2022). This area is characterized by remnant patches of high-elevation cloud forest surrounded by low-elevation grasslands, woodlands, and agriculture (Abera et al. 2022).We surveyed people in Taita-Taveta County during 2021 (August – October), 2022 (January – April), and 2023 (May – June) to understand and characterize human and domestic animal interactions with bats living in buildings. Participants were identified via word-of-mouth conversations with community members throughout the study area. We sought out adults who had bats in their homes (permanent and rental properties) or workplaces at the time of the survey, or who had evidence of recent sustained bat use (i.e., urine staining, fecal deposits, dead bats, etc.). Surveys were directed to one individual per property, however additional family members were sometimes present during questioning. Participants were informed about the study and verbal consent was obtained prior to conducting surveys. This research was approved by the National Commission for Science, Technology and Innovation (#NACOSTI/P/21/9267) and University of Arkansas Institutional Review Board (Protocol #2103320918).Surveys were conducted in the local Taita language, Swahili, or English by local Taita assistants and at least one of the authors. Questions were read to respondents by the research team and answers were transcribed by the team. Our survey consisted of short-answer, dichotomous, and categorical questions to characterize resident human and domestic animal demographics of the property, the duration of bat use of the property and its buildings, and human and domestic animal interactions with bats and their excreta (see Supplementary Materials for detailed information on survey questions). Surveys from 2021 (n = 23) included 23 multi-part questions. After this initial data collection, we added one additional question to characterize human and domestic animal contact with dead bats on the property. Therefore, surveys conducted in 2022 and 2023 (n = 79) included 24 multi-part questions.To explore the effect of the number of residents on the property, length of bat building use, and respondent demographics (gender, education, and age) on direct (e.g., touching, scratches, bites, etc.) and indirect (e.g., contact with bat excrement) interactions with bats, we used univariate generalized linear models with a binomial error distribution and logit link function. We used chi-square tests to compare the frequencies of bat interactions, length of time of bat occupation of buildings, exclusion methods, and reasons for exclusion. All analyses were conducted in R (Version 2023.06.2+561) using the stats package (v4.1.3).RESULTSWe surveyed 102 people who lived or worked in buildings used by bats (Table S1). Over 70% of people reported bat use of their buildings for >5 years (n = 72), with bat presence for 5-10 years most commonly reported (χ 2 = 36.52, P< 0.01, Fig. 1). Most properties (88%) had bat presence year-round (n = 90). Survey participants described frequent exposure to bats that would support pathogen transmission through two main routes: direct and indirect (fecal/oral) contact, with indirect contact between bats and people reported more frequently than direct contacts (χ 2 = 24.77, P < 0.01, Fig. 2A).

Reilly Jackson

and 4 more

Global patterns of reported human-wildlife interactions in areas of land-use changeReilly T. Jackson1, Tamika J. Lunn1, Nathaniel Mull1, Maureen R. McClung2, Kristian M. Forbes1Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas, USA 72701Department of Biology and Health Sciences, Hendrix College, Conway, Arkansas, USA 72032AbstractEmerging infectious diseases are one of the greatest and most pertinent threats to human health and security. Land-use changes, which are increasing globally, are a key driver of emerging infectious disease outbreaks; they increase contact between wildlife and humans and create opportunities for transmission of pathogens between them. While there is great emphasis to characterize the circumstances underlying disease outbreaks in search of mitigation strategies, a global synthesis of documented human-wildlife interactions in the context of land-use change has not been previously done. We conducted a scoping literature review to identify the geographic, taxonomic, and land-use change focus of reported interactions between wildlife, humans, and domestic animals, and discuss the implications of our results in the context of understanding high-risk settings for pathogen exposure. From 529 included articles, we show that human-wildlife interactions are most often reported in Asia and Africa and are most associated with agriculturalization on a global scale except in North America and Oceania, where urbanization was more commonly associated with interactions. Humans and domestic animals interacted with 1021 species of wildlife, including various amphibians, birds, mammals, and reptiles. Interactions with mammals were reported most often, mostly with species in the orders Artiodactyla, Carnivora, Primates, and Rodentia. The type of interactions, and thus potential for cross-species pathogen transmission, varied significantly among continent and wildlife taxa. Our review highlights increased human risks for wildlife pathogen exposure in areas of Africa and Asia with high rates of agriculturalization, and from even-toed ungulates, carnivores, primates, and rodents on a global scale. Further, we identified important gaps in knowledge, such as a lack of documented human interactions with wildlife in central and southwestern Asia and northern Africa and a surprising lack of documented human interactions with bats globally, despite their high number of synanthropic species and role as hosts of zoonoses.Keywords: agriculturalization, human-wildlife contact, land restoration, pathogen surveillance, spillover, urbanization, zoonosesRunning head: Human-wildlife contact under land-use changeContact author:Reilly T JacksonDepartment of Biological Sciences, University of Arkansas850 West Dickson Street, Fayetteville, USA 72701Email: [email protected], phone: +1 479-575-6701IntroductionEmerging infectious diseases (EIDs) are an increasing threat to global human health and security, as evidenced by the current monkeypox virus outbreak and COVID-19 pandemic (Daszak et al. 2000, Morens and Fauci 2013, Wang et al. 2022, Zumla et al. 2022). Most EIDs are zoonotic in origin, reaching human populations via transmission from wildlife and domestic animal host species (spillover), with the majority initiating in wildlife hosts (Jones et al. 2008). Once in human populations, zoonotic diseases have the potential to spread efficiently due to high population densities and connectedness in contemporary globalized societies, hindering the ease and potential efficacy of downstream mitigation efforts (Coltart et al. 2017).A major research priority is to understand the circumstances by which wildlife pathogens are transmitted to humans (Plowright and Hudson 2021). Exposure to pathogens at the human-wildlife interface is the obligatory first step in zoonotic spillover and is driven by multiple ecological mechanisms, including the distribution and abundance of reservoir host species, the prevalence and intensity of infection within reservoir hosts, and the persistence of pathogens once outside the host (Plowright et al. 2017, Wilkinson et al. 2018). Human exposure to wildlife pathogens can occur via direct (e.g., contact with wildlife through butchering and consumption) and indirect (e.g., contact with excreted pathogens in environments where human and wildlife activities overlap) mechanisms (Wolfe et al. 2005, Magouras et al. 2020). Additionally, domestic animals, including pets and livestock, can serve as intermediate (bridging) hosts between wildlife and humans, as occurred with several recent high profile disease outbreaks (e.g., pigs and horses for Nipah and Hendra viruses, respectively; Chua et al. 2000, Playford et al. 2010).One of the principal drivers of human exposure to wildlife pathogens is land-use change (LUC), or anthropogenically induced environmental changes (Foley et al. 2005, Woolhouse and Gowtage-Sequeria 2005, Jones et al. 2008, Gottdenker et al. 2014). Land-use change can impact the abundance and distribution of wildlife and shape wildlife-pathogen interactions, collectively increasing pathogen shedding by reservoir hosts and creating new contact opportunities that facilitate intra- and interspecies pathogen spread (Patz et al. 2004, Keesing et al. 2010, Jones et al. 2013, Faust et al. 2018, Mendoza et al. 2019, Carlson et al. 2022). For example, Nipah virus emergence in Malaysia is believed to have occurred due toPteropus bats moving to roost and feed in orchards surrounding pig farms following deforestation and El Niño-induced drought in their habitat (Chua et al. 2002); Nipah virus was shed in bat saliva and excreta, infecting pigs below, which in turn transmitted the virus to humans. Land-use change has also been associated with spillover ofBorrelia burgdorferi (the causative agent of Lyme disease), hantaviruses, ebolaviruses, and Hendra virus through effects on pathogen exposure (Allan et al. 2003, Wolfe et al. 2007, Plowright et al. 2011, Prist et al. 2017, Rulli et al. 2017).Existing review articles have evaluated links between LUC and pathogen spillover and emergence (Jones et al. 2013, Gottdenker et al. 2014, Johnson et al. 2015). These reviews focus on zoonotic disease outbreaks as a measure of spillover risk but do not evaluate exposure risk specifically. This nuance is crucial because documented disease outbreaks only capture a small fraction of total disease outbreaks (e.g., Glennon et al. 2019), and miss the many exposure opportunities that could have – but did not – lead to disease outbreaks (Plowright et al. 2017). Given that LUC primarily increase pathogen spillover and disease emergence in humans through effects on exposure risk, mechanistic insights into how LUC has influenced zoonotic spillover can be gained through evaluation of studies that link LUC with exposure. To this end, we conducted a scoping, quantitative literature review that characterizes the global breadth of studies that document human exposure to wildlife in the context of LUC to: 1) identify the geographic, taxonomic, and LUC focus of reported interactions; and 2) discuss and compare our results with previously identified geographic and taxonomic hotspots for spillover and emergence risk to highlight the most at risk settings and identify research needs.MethodsWe conducted a scoping literature search in Web of Science in May 2022 to identify empirical articles that report on wildlife interactions with humans and domestic animals in areas of LUC (Figure 1; a full description of the search strategy is available in the Supplementary Materials). To ensure that articles contained relevant information, we applied the following criteria. First, studies had to report human-wildlife interactions within the context of human-induced LUC that is occurring or has occurred in the study area and describe the type of modification. Second, studies had to identify the type of wildlife involved to at least order level. Third, studies had to report the type of human-wildlife interaction (direct, indirect, or domestic animal contact, see below). Fourth, studies must have been based on empirical data. We limited our scope to terrestrial and arboreal vertebrates since they are the overwhelming reservoir source of zoonotic disease outbreaks (Han et al. 2016, Olival et al. 2017).For each included article, we extracted the following information: the country where the interaction occurred, type of LUC, wildlife taxa involved, domestic animals involved, type of interaction, and standard journal article details (publication date, publishing journal). Land-use change was categorized into five types (Foley et al. 2005): (1) agriculturalization, (2) energy development, (3) land restoration, (4) resource extraction, and (5) urbanization (full definitions of each category are provided in the Supplementary Materials). Interactions between humans and wildlife were categorized into three types: (1) direct physical contact, such as humans touching or consuming wildlife and their effluent, (2) indirect contact, such as when humans and wildlife occupy the same areas but not necessarily simultaneously (e.g., humans observing wildlife on their property), or (3) domestic animal-mediated contact, as a way of quantifying the potential for exposure via intermediate host species that also have contact with humans (Table S1). Lastly, we collected information on the type of study (before-after comparison, cross-sectional, experimental, and longitudinal) and on techniques of data collection to understand methods applied within included studies.To investigate how the total number of publications reporting human-wildlife interactions varied by continent, taxa, interaction type, and LUC type, we used chi-square analyses. Post-hoc testing was done to understand interactions between every two categorical variable combination (package “chisq.posthoc.test”; Ebbert 2022). Due to a lack of studies on energy development and resource extraction, and given their similar characteristics with urbanization, these three LUC types were combined to permit more robust analyses. Due to lack of studies reporting human interactions with amphibians, we removed these records from analyses. For studies mentioning multiple continents, wildlife taxa, levels of interaction intensity, or LUC types, we counted the study for multiple categories (Gottdenker et al. 2014). Lastly, because of the differing zoonotic potential amongst wildlife orders, we used a chi-square analysis to compare publication count among orders within each class. Due to the large number of orders involved in interactions, we only included orders documented in 10 or more publications in this set of analyses.ResultsA total of 529 articles were identified that met our inclusion criteria (Figure 1; a full list of included articles and their citations are provided in the Supplementary Materials). Articles were published from 1994-2022 in 173 different journals and two pre-print servers. Over 85% of included articles were published since 2012 (n = 462), demonstrating a strong recent increase in relevant literature. Almost 70% of included articles included cross-sectional data (n = 357), followed by longitudinal (n = 231), experimental (n = 15), and before-after comparisons (n = 8). There were 13 main types of data collection techniques, with the most common methods including human interviews (n = 298), structured observation (n = 137), and analysis of government, non-governmental organization, or public records (n = 121; Table S2).We identified differences in reporting of human-wildlife interactions within all four categories. Human-wildlife interactions were reported in 96 countries, including all continents except Antarctica, with most reported in Asia and Africa and the least reported in Europe and Oceania (χ2 = 246.27, df = 5, P < 0.001; Figure 2). Agriculturalization was the most common LUC type reported (n = 407), followed by urbanization (n = 285), and restoration (χ2 = 37.805, df = 2, P < 0.001; n = 263). Human and domestic animals interacted with wildlife belonging to 50 distinct orders and 1,021 species, all of which fall into amphibians, birds, mammals, and reptiles (Classes: Amphibia, Aves, Mammalia, and Reptilia, respectively). Human interactions with mammals were reported most often (n = 493), followed by birds (n = 74) and reptiles (χ2 = 616.19, df = 2, P < 0.001; n = 45). Wildlife was documented to interact with 21 different species of domestic animal, with cows (n = 99), goats (n = 71), and sheep (n = 63) most reported. Indirect contacts (i.e., human spatial proximity to wildlife without physical contact) were the most common type of human-wildlife interaction (n = 400), followed by domestic animal-mediated contact (i.e., interactions between wildlife and domestic animals; n = 223), and direct contact (i.e., physical contact between a human and wildlife or their effluent; χ2 = 76.14, df = 2, P < 0.001; n = 219).We identified interactions in four of the six possible pair-wise variable combinations. We detected an interactive effect between wildlife taxa and interaction type (χ2 = 11.281, df = 4, P = 0.023). Interaction type did not vary within birds or mammals; however, within reptiles, direct and domestic animal-mediated interactions were significantly more common than indirect interactions (P = 0.029). There was an interactive effect between LUC type and continent (χ2 = 34.672, df = 10, P < 0.001), with reported interactions in areas of urbanization in Oceania and North America more common than in other LUC types on these continents (P ≥ 0.001; Figures 3 and 4). We detected an interactive effect between wildlife taxa and continent (χ2 = 18.456, df = 10, P = 0.047), with reported interactions with mammals in Asia more common than reports of interactions with other taxa (P = 0.028). Lastly, there was an interactive effect between continent and interaction type (χ2 = 19.504, df = 10, P = 0.034), with reports of direct interactions in Europe less common than other interaction types (P = 0.038; Figure 5). There were no interactive effects between LUC type and wildlife taxa (χ2 = 3.4819, df = 4, P = 0.481) or LUC type and interaction type (χ2 = 6.733, df = 4, P = 0.151).Order diversity within taxa varied considerably. Humans and domestic animals interacted with one amphibian, 27 avian, 19 mammalian, and three reptilian orders (Figure 6). Our analysis of the number of publications reporting interactions with different taxa varied among avian (χ2 = 14.44, df = 6, P = 0.025), mammalian (χ2 = 829.45, df = 10, P < 0.001) and reptilian (χ2 = 17.10, df = 2, P < 0.001) orders. Across avian orders, only Galliformes were reported more often than expected, with all other orders (Accipitriformes, Anseriformes, Charadriiformes, Columbiformes, Passeriformes, and Psittaciformes) reported as often as expected (P = 0.025). Within Mammalia, the orders Artiodactyla, Carnivora, Primates, and Rodentia were reported more often in the literature than expected; the orders Chiroptera, Cingulata, Didelphimorphia, Lagomorpha, Perissodactyla, and Pholidota were reported less often than expected; and the order Proboscidea was reported as often as expected (P < 0.001). Within Reptilia, the order Crocodilia was reported more often than expected, the order Testudines was reported less often than expected, and the order Squamata was reported as expected (P = 0.002).DiscussionThis study is the first to characterize publication trends documenting human and domestic animal exposure to wildlife in the context of LUC. We show that human-wildlife interactions are most often reported in Asia and Africa and are most commonly associated with agriculturalization on a global scale but with urbanization in North America and Oceania, specifically. Humans and domestic animals interacted with over 1000 species of wildlife, but interactions with mammals were documented most often, particularly with members of the Artiodactyla (even-toed ungulates), Carnivora, Primate, and Rodentia orders. Interaction type varied among continent and wildlife taxa, which has important implications for the risk of zoonotic pathogen spillover following wildlife exposure. We further focus on understanding how these geographic and taxonomic hotspots of human-wildlife interactions relate to known zoonotic disease emergence and identify areas for future research that will facilitate a comprehensive picture of zoonotic disease risk.

Tamika J. Lunn

and 4 more