2.1 Benchmarking dataset
Benchmarking dataset of protein-protein and protein-peptide complexes
were taken from Vrevenet al. [39] and Hauser et al. [40],
respectively. These datasets were earlier used for benchmarking studies
of docking programs. Protein-protein benchmarking dataset is composed of
non-redundant high-quality structures (resolution < 3.25 Å).
Protein−peptide complexes were composed of peptides with 3 to 12
residues (resolution < 2.0 Å, R-free < 0.3). The
dataset consists of 134 protein-protein and 50 protein-peptide
complexes. The PDB IDs are provided in Table 1.