EYR EYR EYR YTH YTH YTH
Standard Removing sex-linked loci Standard Removing sex-linked loci
Filter # individuals # loci # loci # individuals # loci # loci
No filtering 782 53,324 53,324 641 118,732 118,732
Secondaries 782 35,663 35,663 641 74,470 74,470
Sex-linked 31,856 71,056
Excessively heterozygous 31,832 71,038
Read depth 782 21,577 19,531 641 53,179 50,783
Locus missing data 782 13,972 12,899 641 16,481 15,813
Individual missing data 753 13,925 12,853 628 16,421 15,771
Minor Allele Count 753 13,693 12,626 628 14,908 14,246