Understanding drivers of cloud organization is crucial for accurately estimating clouds’ feedback to a warming climate. Shallow mesoscale circulations are thought to play an important role in cloud organization, but they have not been observed. Here, we present observational evidence for shallow mesoscale overturning circulations (SMOCs) from divergence measurements made during the EUREC4A field campaign in the north-Atlantic trades. Meteorological reanalyses reproduce the observed low-level divergence well and confirm SMOCs to be mesoscale features (ca. 200 km). Large mesoscale variability, five-fold the mean, is shown to be associated with the ubiquity of SMOCs. Furthermore, time-lag correlations suggest that SMOCs amplify mesoscale moisture variance at cloud-base and in the sub-cloud layer. Through their modulation of cloud-base moisture, SMOCs influence the drying efficiency of entrainment, thus yielding moist ascending branches and dry descending branches. The observed moisture variance differs from expectations from large-eddy simulations, which show largest variance near cloud top and negligible sub-cloud variance. The ubiquity of SMOCS and their coupling to moisture and cloud fields suggest that the strength and scale of mesoscale circulations are important in determining how clouds couple to climate, something which is not considered by present theories.