References
Alexander, J. M., Edwards, P. J. (2010). Limits to the niche and range margins of alien species. Oikos , 119(9), 1377-1386
Alexander, D. H., Novembre, J., & Lange, K. (2009). Fast model-based estimation of ancestry in unrelated individuals. Genome Research ,19 (9), 1655-1664.
Andrade, P., Carneiro, M. (2021). Pterin-based pigmentation in animals.Biology Letters , 17 (8), 20210221.
Aulchenko, Y. S., Ripke, S., Isaacs, A., & Van Duijn, C. M. (2007). GenABEL: an R library for genome-wide association analysis.Bioinformatics , 23 (10), 1294-1296.
Baeckens, S., Driessens, T., & Van Damme, R. (2018a). The brown anole dewlap revisited: Do predation pressure, sexual selection, and species recognition shape among-population signal diversity? PeerJ , 6, e4722.
Baeckens, S., Driessens, T., Huyghe, K., Vanhooydonck, B., Van Damme, R. (2018b). Intraspecific variation in the information content of an ornament: why relative dewlap size signals bite force in some, but not all island populations of Anolis sagrei . Integrative and Comparative Biology . 58 , 25-37.
Baeckens, S., Losos, J.B., Irschick, D.J., Kolbe, J.J., & Bock, D.G. (2023). Introduction history and hybridization determine the hydric balance of an invasive lizard facing a recent climate niche shift.Evolution , 77 (1), 123-137.
Barthel, K. U. (2006). 3D-data representation with ImageJ. ImageJ Conference .
Bates, D., Mächler, M., Bolker, B. M., & Walker, S. C. (2015). Fitting linear mixed-effects models using lme4. Journal of Statistical Software , 67 (1), 1-48.
Battlay, P., Wilson, J., Bieker, V.C. et al. (2023). Large haploblocks underlie rapid adaptation in the invasive weed Ambrosia artemisiifolia . Nature Communications . 14 , 1717.
Beckschäfer, P. (2015). Hemispherical_2.0. Batch processing hemispherical and canopy photographs with ImageJ, User Manual.
Bock, D. G., Baeckens, S., Pita-Aquino, J. N., Chejanovski, Z. A., Michaelides, S. N., Muralidhar, P., … & Kolbe, J. J. (2021). Changes in selection pressure can facilitate hybridization during biological invasion in a Cuban lizard. Proceedings of the National Academy of Sciences , 118 (42).
Bock, D.G., Baeckens, S., Kolbe, J.J., Losos, J.B. (2023). When adaptation is slowed down: Genomic analysis of evolutionary stasis in thermal tolerance during biological invasion in a novel climate.Molecular Ecology .
Bock, D. G., Caseys, C., Cousens, R. D., Hahn, M. A., Heredia, S. M., Hübner, S., … & Rieseberg, L. H. (2015). What we still don’t know about invasion genetics. Molecular Ecology , 24 (9), 2277-2297.
Bock, D. G., Kantar, M. B., Caseys, C., Matthey-Doret, R., & Rieseberg, L. H. (2018). Evolution of invasiveness by genetic accommodation.Nature Ecology & Evolution , 2 (6), 991-999.
Browning, B. L., & Browning, S. R. (2016). Genotype imputation with millions of reference samples. American Journal of Human Genetics , 98 (1), 116-126.
Campbell, T. S. (1996). Northern range expansion of the brown anole Anolis sagrei in Florida and Georgia. Herpetological Review ,27 (3), 155-157.
Cheng, R., Parker, C. C., Abney, M., & Palmer, A. A. (2013). Practical considerations regarding the use of genotype and pedigree data to model relatedness in the context of genome-wide association studies. G3: Genes, Genomes, Genetics , 3 (10), 1861-1867.
Colautti, R. I., Barrett, S. C. H. (2013). Rapid adaptation to climate facilitates range expansion of an invasive plant. Science ,342 (6156), 364-366.
Colautti, R. I., Maron, J., & Barrett, S. C. H. (2009). Common garden comparisons of native and introduced plant populations: Latitudinal clines can obscure evolutionary inferences. Evolutionary Applications,2 (2), 187-199.
Cole, G. L. (2013). Lost in translation: adaptation of mating signals in changing environments. Springer Science Reviews , 1 , 25-40.
Crews, D. (1975). Effects of different components of male courtship behaviour on environmentally induced ovarian recrudescence and mating preferences in the lizard, Anolis carolinensis. Animal Behaviour ,23 , 349-356.
Cristescu, M. E. (2015). Genetic reconstructions of invasion history.Molecular Ecology , 24, 2212-2225.
Cummings, M. E. (2007). Sensory trade-offs predict signal divergence in surfperch. Evolution , 61 (3), 530-545.
Cuthill, I. C., Bennett, A. T., Partridge, J. C., & Maier, E. J. (1999). Plumage reflectance and the objective assessment of avian sexual dichromatism. The American Naturalist , 153 (2), 183-200.
Danecek, P., Auton, A., Abecasis, G., Albers, C. A., Banks, E., Depristo, M. A., Handsaker, R. E., Lunter, G., Marth, G. T., Sherry, S. T., Mcvean, G., & Durbin, R. (2011). The variant call format and VCFtools. Bioinformatics , 27, 2156–2158.
De Meyer, J., Donihue, C. M., Scantlebury, D., Ng, J., Glor, R. E., Losos, J. B., & Geneva, A. J. (2019). Protocol for setting up and rearing a successful lizard room. Anolis Newsletter VII .
DeVos, T., Bock, D. G., & Kolbe, J. J. (2023). Rapid introgression of non-native alleles following hybridization between a nativeAnolis lizard species and a cryptic invader across an urban landscape. Molecular Ecology , 32(11), 2930–2944.
Dlugosch, K. M., & Parker, I. M. (2008). Founding events in species invasions: Genetic variation, adaptive evolution, and the role of multiple introductions. Molecular Ecology , 17(1), 431-449.
Driessens, T., Baeckens, S., Balzarolo, M., Vanhooydonck, B., & Huyghe, K. (2017). Climate-related environmental variation in a visual signalling device: the male and female dewlap in Anolis sagrei lizards.Journal of Evolutionary Biology , 30 (10), 1846-1861.
Duggal, P., Gillanders, E. M., Holmes, T. N., & Bailey-Wilson, J. E. (2008). Establishing an adjusted p-value threshold to control the family-wide type 1 error in genome wide association studies. BMC Genomics , 9 (1), 1-8.
Endler, J. A. (1993). Some general comments on the evolution and design of animal communication systems. Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences ,340 (1292), 215-225.
Endler, J. A. (1990). On the measurement and classification of color in studies of animal color patterns. Biological Journal of the Linnean Society , 41 (4), 315-352.
Endler, J. A. (1992). Signals, signal conditions, and the direction of evolution. The American Naturalist , 139 , S125-S153.
Evanno, G., Regnaut, S., & Goudet, J. (2005). Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study. Molecular Ecology , 14 (8), 2611-2620.
Ficetola, G. F., Bonin, A., & Miaud, C. (2008). Population genetics reveals origin and number of founders in a biological invasion.Molecular Ecology , 17 (3), 773-782.
Fleishman, L. J. (1992). The influence of the sensory system and the environment on motion patterns in the visual displays of anoline lizards and other vertebrates. The American Naturalist , 139 , S36-S61.
Fleishman, L. J., Loew, E. R., & Leal, M. (1993). Ultraviolet vision in lizards. Nature , 365 (6445), 397-397.
Fleishman, L. J., & Persons, M. (2001). The influence of stimulus and background colour on signal visibility in the lizard Anolis cristatellus. The Journal of Experimental Biology , 204 (9), 1559-1575.
Francis, R. M. (2017). pophelper: an R package and web app to analyse and visualize population structure. Molecular Ecology Resources ,17 (1), 27-32.
Frichot, E., Schoville, S.D., Bouchard, G., Francois, O. (2013). Testing for associations between loci and environmental gradients using latent factor mixed models. Molecular Biology and Evolution , 30, 1687–1699.
Garman, S. (1887). On West Indian Iguanidae and on West Indian Scincidae in the collection of the Museum of Comperative Zoology at Cambridge, Massachusets, USA. Bulletin of the Essex Institute , 19 , 25-50.
Garrison, E., & Marth, G. (2012). Haplotype-based variant detection from short-read sequencing. arXiv preprint arXiv:1207.3907.
Geneva, A. J., Park, S., Bock, D., Mello, P. de, Sarigol, F., Tollis, M., … & Losos, J. B. (2021). Chromosome-scale genome assembly of the brown anole (Anolis sagrei), a model species for evolution and ecology. bioRxiv . 2021.09.28.462146; doi: https://doi.org/10.1101/2021.09.28.462146.
Hijmans, R. J., Cameron, S. E., Parra, J. L., Jones, P. G., & Jarvis, A. (2005). Very high resolution interpolated climate surfaces for global land areas. International Journal of Climatology: A Journal of the Royal Meteorological Society , 25 (15), 1965-1978.
Hodgins, K. A., Bock, D. G., & Rieseberg, L. H. (2018). Trait evolution in invasive species. Annual Plant Reviews Online , 1, 459-496.
Huey, R. B. (2000). Rapid evolution of a geographic cline in size in an introduced fly. Science , 287(5451), 308-309.
Jaspers, C., Ehrlich, M., Pujolar, J. M., Kunzel, S., Bayer, T., Limborg, M.T., Lombard, F., Browne, W. E., Stefanova, K., & Reusch, B. H. (2021). Invasion genomics uncover contrasting scenarios of genetic diversity in a widespead marine invader. Proceedings of the National Academy of Sciences, 118 (51).
Jombart, T., & Ahmed, I. (2011). adegenet 1.3-1: new tools for the analysis of genome-wide SNP data. Bioinformatics27 (21), 3070-3071.
Kassambara, A. (2019). ggcorrplot: Visualization of a correlation matrix using ‘ggplot2’. R package version 0.1, 3.
Kaler, A.S., Purcell, L.C. (2019). Estimation of a significance threshold for genome-wide association studies. BMC Genomics, 20 , 618.
Keller, S. R., & Taylor, D. R. (2008). History, chance and adaptation during biological invasion: Separating stochastic phenotypic evolution from response to selection. In Ecology Letters , 11 (8), 852-866.
Keller, S. R., & Taylor, D. R. (2010). Genomic admixture increases fitness during a biological invasion. Journal of Evolutionary Biology , 23 (8), 1720-1731.
Kolbe, J. J., Glor, R. E., Schettino, L. R., Lara, A. C., Larson, A., & Losos, J. B. (2004). Genetic variation increases during biological invasion by a Cuban lizard. Nature , 431 (7005), 177-181.
Kolbe, J. J., Larson, A., & Losos, J. B. (2007a). Differential admixture shapes morphological variation among invasive populations of the lizard Anolis sagrei. Molecular Ecology , 16 (8), 1579-1591.
Kolbe, J. J., Glor, R. E., Schettino, L. R., Lara, A. C., Larson, A., & Losos, J. B. (2007b). Multiple sources, admixture, and genetic variation in introduced Anolis lizard populations. Conservation Biology , 21(6), 1612-1625.
Kolbe, J. J., Larson, A., Losos, J. B., & de Queiroz, K. (2008). Admixture determines genetic diversity and population differentiation in the biological invasion of a lizard species. Biology Letters ,4 (4), 434-437.
Kuznetsova, A., Brockhoff, P. B., & Christensen, R. H. B. (2017). lmerTest Package: Tests in Linear Mixed Effects Models. Journal of Statistical Software , 82 , 1-26.
Lailvaux, S. P., & Irschick, D. J. (2007). The evolution of performance- based male fighting ability in Caribbean Anolislizards. American Naturalist , 170(4), 573-586.
Lawson Handley, L. J., Estoup, A., Evans, D. M., Thomas, C. E., Lombaert, E., Facon, … & Roy, H. E. (2011). Ecological genetics of invasive alien species. BioControl , 56 (4), 409-428.
Leal, M., & Fleishman, L. J. (2002). Evidence for habitat partitioning based on adaptation to environmental light in a pair of sympatric lizard species. Proceedings of the Royal Society. Series B: Biological Sciences , 269 (1489), 351-359.
Leal, M., & Rodríguez-Robles, J. A. (1995). Antipredator responses of Anolis cristatellus (Sauria, Polychrotidae). Copeia , 155-161.
Leal, M., & Fleishman, L. J. (2004). Differences in visual signal design and detectability between allopatric populations of Anolis lizards. The American Naturalist , 163 (1), 26-39.
Leal, M., & Rodríguez-Robles, J. A. (1997a). Antipredator responses of the Puerto Rican giant anole, Anolis cuvieri (Squamata: Polychrotidae).Biotropica , 29 , 372-375.
Leal, M., & Rodríguez-Robles, J. A. (1997b). Signalling displays during predator-prey interactions in a Puerto Rican anole, Anolis cristatellus.Animal Behaviour , 54 (5), 1147-1154.
Lee, C. E. (2002). Evolutionary genetics of invasive species.Trends in Ecology and Evolution , 17 (8), 386-391.
Lee, J. C. (1992). Anolis sagrei in Florida: Phenetics of a Colonizing Species III. West Indian and Middle American Comparisons. Copeia ,4 , 942-954.
Losos, J. B. (1985). An experimental demonstration of the species-recognition role of Anolis dewlap color. Copeia , 905-910.
Losos, J. B. (2009). Lizards in an Evolutionary Tree: Ecology and Adaptive Radiation of anoles . University of California Press.
Lowry, D. B., Hoban, S., Kelley, J. L., Lotterhos, K. E., Reed, L. K., Antolin, M. F., & Storfer, A. (2017). Breaking RAD: An evaluation of the utility of restriction site-associated DNA sequencing for genome scans of adaptation. Molecular Ecology Resources , 17(2), 142–152.
Lucek, K., Roy, D., Bezault, E., Sivasundar, A., & Seehausen, O. (2010). Hybridization between distant lineages increases adaptive variation during a biological invasion: Stickleback in Switzerland.Molecular Ecology , 19, 3995-4011.
Macedonia, J. M., James, S., Wittle, L. W. & Clark, D. W. (2000). Skin pigments and coloration in the Jamaican radiation of Anolislizards. Journal of Herpetology , 34, 99-109.
Maia, R., Eliason, C. M., Bitton, P. P., Doucet, S. M., & Shawkey, M. D. (2013). pavo: An R package for the analysis, visualization and organization of spectral data. Methods in Ecology and Evolution ,4 (10), 906-913.
McLean, C. A., Lutz, A., Rankin, K. J., Stuart-Fox, D., & Moussalli, A. (2017). Revealing the biochemical and genetic basis of color variation in a polymorphic lizard. Molecular Biology and Evolution34 (8), 1924-1935.
Narasimhan, V., Danecek, P., Scally, A., Xue, Y., Tyler-Smith, C., & Durbin, R. (2016). BCFtools/RoH: A hidden Markov model approach for detecting autozygosity from next-generation sequencing data.Bioinformatics , 32(11), 1749-1751.
Ng, J., Landeen, E. L., Logsdon, R. M., & Glor, R. E. (2013a). Correlation between anolis lizard dewlap phenotype and environmental variation indicates adaptive divergence of a signal important to sexual selection and species recognition. Evolution , 67 (2), 573-582.
Ng, J., Kelly, A. L., MacGuigan, D. J., & Glor, R. E. (2013b). The role of heritable and dietary factors in the sexual signal of a HispaniolanAnolis lizard, Anolis distichus . The Journal of Heredity , 104(6), 862-873.
Ortiz, E., 1962. Drosopterins in the dewlap of some anoline lizards.American Zoologist , 2 (4), 545-546.
Peischl, S., Dupanloup, I., Kirkpatrick, M., & Excoffier, L. (2013). On the accumulation of deleterious mutations during range expansions.Molecular Ecology , 22(24), 5972-5982.
Pritchard, J. K., Stephens, M., & Donnelly, P. (2000). Inference of population structure using multilocus genotype data. Genetics ,155 , 945-959.
Purcell, S., Neale, B., Todd-Brown, K., Thomas, L., Ferreira, M. A. R., Bender, D., … & Sham, P. C. (2007). PLINK: a tool set for whole-genome association and population-based linkage analyses.American Journal of Human Genetics , 81 (3), 559-575.
Puritz, J. B., Hollenbeck, C. M., & Gold, J. R. (2014). dDocent: A RADseq, variant-calling pipeline designed for population genomics of non-model organisms. PeerJ , 2, e431.
R Development Core Team, R. (2011). R: a language and environment for statistical computing. R Foundation for Statistical Computing .
Rand, A. S., & Williams, E. E. (1970). An estimation of redundancy and information content of anole dewlaps. The American Naturalist ,104 (935), 99-103.
Rasband, W. (2012). ImageJ. U. S. National Institutes of Health, Bethesda, Maryland, USA, http://imagej.nih.gov/ij/ .
Rius, M., & Darling, J. A. (2014). How important is intraspecific genetic admixture to the success of colonising populations? InTrends in Ecology and Evolution , 29 (4), 233-242.
Sakai, A. K., Allendorf, F. W., Holt, J. S., Lodge, D. M., Molofsky, J., With, K. A., … & Weller, S. G. (2001). The population biology of invasive species. Annual Review of Ecology and Systematics ,32 (1), 305-332.
Sax, D. F., Stachowicz, J. J., Brown, J. H., Bruno, J .F., Dawson, M. N., Gaines, S. D., Grosberg, R. K., Hastings, A., Holt, R. D., Mayfield, M. M., O’Connor, M. I. & Rice, W. R. (2007). Ecological and evolutionary insights from species invasions. Trends in Ecology and Evolution , 22(9), 465-471.
Shine, R. (2011). Invasive species as drivers of evolutionary change: cane toads in tropical Australia. Evolutionary Applications ,5 (2), 107-116.
Skotte, L., Jørsboe, E., Korneliussen, T. S., Moltke, I., & Albrechtsen, A. (2019). Ancestry-specific association mapping in admixed populations. Genetic Epidemiology , 43 (5), 506-521.
Steffen, J. E., & McGraw, K. J. (2007). Contributions of pterin and carotenoid pigments to dewlap coloration in two anole species.Comparative Biochemistry and Physiology, Part B , 146: 42-46.
Steffen, J. E., & McGraw, K. J. (2009). How dewlap color reflects its carotenoid and pterin content in male and female brown anoles (Norops sagrei ). Comparative Biochemistry and Physiology – B Biochemistry and Molecular Biology , 154, 334-340.
Steffen, J. E., Hill, G. E., & Guyer, C. (2010). Carotenoid access, nutritional stress, and dewlap color of male brown anoles.Copeia , 2010 (2) , 239-246.
Stern, D. B., & Lee, C. E. (2020). Evolutionary origins of genomic adaptations in an invasive copepod. Nature Ecology and Evolution , 4, 1084–1094.
Stoffel, M. A., Nakagawa, S., & Schielzeth, H. (2017). rptR: repeatability estimation and variance decomposition by generalized linear mixed-effects models. Methods Ecology and Evolution ,8 (11), 1639-1644.
Storey, J. D., Bass, A. J., Dabney, A., & Robinson, D. (2015). Qvalue: Q-value estimation for false discovery rate control. R package version 2.0. http://github.com/jdsto rey/qvalue.
Toews, D. P. L., Hofmeister, N. R., & Taylor, S. A. (2017). The evolution and genetics of carotenoid processing in animals. Trends in Genetics , 33 (3), 171-182.
Van Belleghem, S. M., Papa, R., Ortiz-Zuazaga, H., Hendrickx, F., Jiggins, C. D., Owen McMillan, W., & Counterman, B. A. (2018). patternize: An R package for quantifying colour pattern variation.Methods in Ecology and Evolution , 9 (2), 390-398.
Vanhooydonck, B., Herrel, A., Meyers, J. J., & Irschick, D. J. (2009). What determines dewlap diversity in Anolis lizards? An among-island comparison. Journal of Evolutionary Biology , 22 (2), 293-305.
Vanhooydonck, B., Herrel, A. Y., Van Damme, R., & Irschick, D. J. (2005). Does dewlap size predict male bite performance in JamaicanAnolis lizards? Functional Ecology , 19(1), 38-42.
Williams, E. E. (1974). Williams Report. The Second Anolis Newsletter , 1-10.
Zheng, X., Levine, D., Shen, J., Gogarten, S. M., Laurie, C., & Weir, B. S. (2012). A high-performance computing toolset for relatedness and principal component analysis of SNP data. Bioinformatics ,28 , 3326-3328.
Zhou, X., & Stephens, M. (2012). Genome-wide efficient mixed-model analysis for association studies. Nature Genetics , 44 (7), 821-824.
Zhu, B. R., Barrett, S. C. H., Zhang, D. Y., & Liao, W. J. (2017). Invasion genetics of Senecio vulgaris: loss of genetic diversity characterizes the invasion of a selfing annual, despite multiple introductions. Biological Invasions 19 (1), 255-267.