2.3.6 ǀ Domains architectures, linear motifs, protein
interactions and biding sites
Domains compositions of cpOAS1 were predicted in Pfam (version 34.0),
InterPro (version 85.0) and SMART (Simple Modular Architecture Research
Tool)57 database. Linear motif and functional
characterization were done using the eukaryotic linear motif (ELM)
prediction tools. Proteins that interact with caprine OAS1 were
predicted by the String (Version 11.0) program
(http://string-db.org) and the cpOAS1 sequence was used to search
against the Ovis aries organism and the confidence score was set
to high (0.700). Different metal biding, active and NTP binding sites
were predicted by the InterPro database.