Reference
Al-Shami, S. A., Rawi, C. S. M., Ahmad, A. H., & Nor, S. A. M. (2012).
Redescription of Chironomus javanus and Chironomus kiiensis (Diptera:
Chironomidae) Larvae and Adults Collected from a Rice Field in Pulau
Pinang, Malaysia. Tropical life sciences research, 23 (1), 77-86.
Amora, G., Hamada, N., Fusari, L. M., & Andrade-Souza, V. (2015). An
Asiatic Chironomid in Brazil: morphology, DNA barcode and bionomics.Zookeys (514), 129-144. https://doi.org/10.3897/zookeys.514.9925
Armitage, P. D., Cranston, P. s., & Pinder, L. C. (1995). The
Chironomidae: Biology and ecology of non-biting midges. Springer
Science: Chapman & Hall. https://doi.org/10.1007/978-94-011-0715-0.
Baehrecke, E. H. (2002). How death shapes life during development.Nat Rev Mol Cell Biol, 3 (10), 779-787.
https://doi.org/10.1038/nrm931
Bao, W., Kojima, K. K., & Kohany, O. (2015). Repbase Update, a database
of repetitive elements in eukaryotic genomes. Mob DNA, 6 , 11.
https://doi.org/10.1186/s13100-015-0041-9
Bellex, X., Martin D., Piulachs M. (2005). The Mevalonata Pathway and
the synthesis of Juvenile hormone in insects. Annu Rev Entomol ,
2005,50:181-99. https:/ /doi.org/10.1146/annurev.ento.50.071803.130356
Benson, G. (1999). Tandem repeats finder: a program to analyze DNA
sequences. Nucleic acids research, 27 (2), 573-580.
https://doi.org/ 10.1093/nar/27.2.573
Bergtrom, G., Laufer, H., & Rogers, R. (1976). Fat Body: A Site Of
Hemoglobin Syntheis In Chironomus Thummi (Diptera) Cell Biology,
69 , 264-274. https://doi.org/10.1083/jcb.69.2.264
Buchfink, B., Reuter, K., & Drost, H. G. (2021). Sensitive protein
alignments at tree-of-life scale using DIAMOND. Nat Methods,
18 (4), 366-368. https://doi.org/10.1038/s41592-021-01101-x
Buchfink, B., Xie, C., & Huson, D. H. (2015). Fast and sensitive
protein alignment using DIAMOND. Nat Methods, 12 (1), 59-60.
https://doi.org/10.1038/nmeth.3176
Castresana, J. (2000). Selection of Conserved Blocks from Multiple
Alignments for Their Use in Phylogenetic Analysis. Molecular
Biology and Evolution, 17 (4), 540-552. https://doi.org/10.1093/
oxfordjournals.molbev.a026334
Chen, Y., Chen, Y., Shi, C., Huang, Z., Zhang, Y., Li, S., Li, Y., Ye,
J., Yu, C., Li, Z., Zhang, X., Wang, J., Yang, H., Fang, L., Chen, Q.
(2018). SOAPnuke: a MapReduce acceleration-supported software for
integrated quality control and preprocessing of high-throughput
sequencing data. Gigascience, 7 (1), 1-6.
https://doi.org/10.1093/gigascience/gix120
Cornette, R., Gusev, O., Nakahara, Y., Shimura, S., Kikawada, T., &
Okuda, T. (2015). Chironomid midges (Diptera, Chironomidae) show
extremely small genome sizes. Zoological Science , 32(3), 248–
254. https:/ /doi.org/10.2108/zs140166.
Cornette, R., Yamamoto, N., Masaru, & Yamamoto. (2017). A new
anhydrobiotic midge from Malawi, Polypedilum pembai sp.n. (Diptera:
Chironomidae), closely related to the desiccation tolerant midge,
Polypedilum vanderplanki Hinton. Systematic Entomology, 42 ,
814-825. https://doi.org/ 10.1111/syen.12248
David, J. P., Coissac, E., Melodelima, C., Poupardin, R., Riaz, M. A.,
Chandor-Proust, A., & Reynaud, S. (2010). Transcriptome response to
pollutants and insecticides in the dengue vector Aedes aegypti using
next-generation sequencing technology. BMC Genomics, 11 , 216.
https://doi.org/10.1186/1471-2164-11-216
De Bie, T., Cristianini, N., Demuth, J. P., & Hahn, M. W. (2006). CAFE:
a computational tool for the study of gene family evolution.Bioinformatics, 22 (10), 1269-1271.
https://doi.org/10.1093/bioinformatics/btl097
Demay, Y., Perochon, J., Szuplewski, S., Mignotte, B., Gaumer, S.
(2014). The PERK pathway independently triggers apoptosis and a
Rac1/Slpr/JNK/Dilp8 signaling favoring tissue homeostasis in a chronic
ER stress Drosophila model. Cell Death and Disease, 5, e1452.
https://doi.org/10.1038/cddis.2014.403
Dudchenko, O., Batra, S. S., Omer, A. D., Nyquist, S. K., Hoeger, M.,
Durand, N. C., Shamim, M. S., Machol, I., Lander, E. S., Aiden, E. L.
(2017). De novo assembly of the Aedes aegypti genome using Hi-C yields
chromosome-length scaffolds. Science, 356 , 92-97.
https://doi.org/10.1126/science.aal3327
Durand, N. C., Shamim, M. S., Machol, I., Rao, S. S., Huntley, M. H.,
Lander, E. S., & Aiden, E. L. (2016). Juicer Provides a One-Click
System for Analyzing Loop-Resolution Hi-C Experiments. Cell Syst,
3 (1), 95-98. https://doi.org/10.1016/j.cels.2016.07.002
Emms, D. M., & Kelly, S. (2015). OrthoFinder: solving fundamental
biases in whole genome comparisons dramatically improves orthogroup
inference accuracy. Genome Biol, 16 , 157.
https://doi.org/10.1186/s13059-015-0721-2
Emms, D. M., & Kelly, S. (2019). OrthoFinder: phylogenetic orthology
inference for comparative genomics. Genome Biol, 20 (1), 238.
https://doi.org/10.1186/s13059-019-1832-y
Epel, D., Luckenbach, T., & Stevenson, C. N. (2008). EFFLUX
TRANSPORTERS: Newly Appreciated Roles in Protection against Pollutants.Environmental science & technology, 42 (11), 3914-3920.
https://doi.org/10.1021/es087187v
Ffrench-Constant, R. H. (2013). The molecular genetics of insecticide
resistance. Genetics, 194 (4), 807-815.
https://doi.org/10.1534/genetics.112.141895
Frankenberg, N., Mukougawa, K., Takayuki Kohchi, & Lagarias, J. C.
(2001). Functional Genomic Analysis of the HY2 Family of Ferredoxin
Dependent Bilin Reductases from Oxygenic Photosynthetic Organisms.The Plant cell, 13 , 965–978. https://doi.org/ 10.2307/3871353
Fuchs, Y., & Steller, H. (2015). Live to die another way: modes of
programmed cell death and the signals emanating from dying cells.Nat Rev Mol Cell Biol, 16 (6), 329-344.
https://doi.org/10.1038/nrm3999
Galluzzi, L., Vitale, I., Aaronson, S. A., Abrams, J. M., Adam, D.,
Agostinis, P., . . . Kroemer, G. (2018). Molecular mechanisms of cell
death: recommendations of the Nomenclature Committee on Cell Death 2018.Cell Death Differ, 25 (3), 486-541.
https://doi.org/10.1038/s41418-017-0012-4
Goto, S. G., Philip, B. N., Teets, N. M., Kawarasaki, Y., Lee, R. E.,
Jr., & Denlinger, D. L. (2011). Functional characterization of an
aquaporin in the Antarctic midge Belgica antarctica. J Insect
Physiol, 57 (8), 1106-1114.
https://doi.org/10.1016/j.jinsphys.2011.03.023
Grabherr, M. G., Haas, B. J., Yassour, M., Levin, J. Z., Thompson, D.
A., Amit, I., Regev, A. (2011). Trinity: reconstructing a full-length
transcriptome without a genome from RNA-Seq data. Nat Biotechnol,
29 (7), 644-652. https://doi.org/10.1038/nbt.1883
Guo, S., Sun, D., Tian, Z., Liu, W., Zhu, F., & Wang, X. P. (2019). The
limited regulatory roles of juvenile hormone degradation pathways in
reproductive diapause preparation of the cabbage beetle, Colaphellus
bowringi. J Insect Physiol, 119 , 103967.
https://doi.org/10.1016/j.jinsphys.2019.103967
Ha, M. H., & Choi, J. (2008). Chemical-induced alteration of hemoglobin
expression in the 4th instar larvae of Chironomus tentans Mg. (Diptera:
Chironomidae). Environ Toxicol Pharmacol, 25 (3), 393-398.
https://doi.org/10.1016/j.etap.2007.12.006
Haas, B. J., Papanicolaou, A., Yassour, M., Grabherr, M., Blood, P. D.,
Bowden, J., . . . Regev, A. (2013). De novo transcript sequence
reconstruction from RNA-seq using the Trinity platform for reference
generation and analysis. Nat Protoc, 8 (8), 1494-1512.
https://doi.org/10.1038/nprot.2013.084
Hay, B. A., & Guo, M. (2006). Caspase-dependent cell death in
Drosophila. Annu Rev Cell Dev Biol, 22 , 623-650.
https://doi.org/10.1146/annurev.cellbio.21.012804.093845
Hay, B. A., Huh, J. R., & Guo, M. (2004). The genetics of cell death:
approaches, insights and opportunities in Drosophila. Nat Rev
Genet, 5 (12), 911-922. https://doi.org/10.1038/nrg1491
Hebert, P. D., Cywinska, A., Ball, S. L., & deWaard, J. R. (2003).
Biological identifications through DNA barcodes. Proc Biol Sci,
270 (1512), 313-321. https://doi.org/10.1098/rspb.2002.2218
Henschel, R., Lieber, M., Wu, L.-S., Nista, P. M., & Haas, B. J.
(2012). Trinity RNA-Seq Assembler Performance Optimization. ACM,
1 . https://doi.org/10.1145/2335755.2335842
Hinton H.E. (1951). A new Chironomid from Africa, the larva of which can
be dehydrated without injury. Proceedings of the Zoological
Society of London, 121 (2), 371-380. https://doi.org/
10.1093/gigascience/gix120
Holt, C., & Yandell, M. (2011). MAKER2: an annotation pipeline and
genome_database management tool for second_generation genome projects.Bmc Bioinformatics, 12 , 491.
https://doi.org/10.1186/1471-2105-12-491
Hu, J., Fan, J., Sun, Z., & Liu, S. (2020). NextPolish: a fast and
efficient genome polishing tool for long-read assembly.Bioinformatics, 36 (7), 2253-2255.
https://doi.org/10.1093/bioinformatics/btz891
Hu, X. L., Niu, J. J., Meng, Q., Chai, Y. H., Chu, K. H., & Chan, K. M.
(2019). Effects of two juvenile hormone analogue insecticides,
fenoxycarb and methoprene, on Neocaridina davidi. Environ Pollut,
253 , 89-99. https://doi.org/10.1016/j.envpol.2019.06.120
Jiang, K., Thorsen, O., Peters, A., Smith, B., & Sosa, C. P. (2008). An
Efficient Parallel Implementation of the Hidden Markov Methods for
Genomic Sequence-Search on a Massively Parallel System. IEEE
Transactions on Parallel and Distributed Systems, 19 (1), 15-23.
https://doi.org/10.1109/tpds.2007.70712
Johnson, A. D., Handsaker, R. E., Pulit, S. L., Nizzari, M. M.,
O’Donnell, C. J., & de Bakker, P. I. (2008). SNAP: a web-based tool for
identification and annotation of proxy SNPs using HapMap.Bioinformatics, 24 (24), 2938-2939.
https://doi.org/10.1093/bioinformatics/btn564
Jones, P., Binns, D., Chang, H. Y., Fraser, M., Li, W., McAnulla, C., .
. . Hunter, S. (2014). InterProScan 5: genome-scale protein function
classification. Bioinformatics, 30 (9), 1236-1240.
https://doi.org/10.1093/bioinformatics/btu031
Kaiser, T. S., Poehn, B., Szkiba, D., Preussner, M., Sedlazeck, F. J.,
Zrim, A., . . . Tessmar-Raible, K. (2016). The genomic basis of
circadian and circalunar timing adaptations in a midge. Nature,
540 (7631), 69-73. https://doi.org/10.1038/nature20151
Kanehisa, M., Goto, S., Kawashima, S., Okuno, Y., & Hattori, M. (2004).
The KEGG resource for deciphering the genome. Nucleic Acids Res,
32 (Database issue), 277-280. https://doi.org/10.1093/nar/gkh063
Katoh, K., & Standley, D. M. (2013). MAFFT multiple sequence alignment
software version 7: improvements in performance and usability. Mol
Biol Evol, 30 (4), 772-780. https://doi.org/10.1093/molbev/mst010
Kelley, J. L., Peyton, J. T., Fiston-Lavier, A. S., Teets, N. M., Yee,
M. C., Johnston, J. S., . . . Denlinger, D. L. (2014). Compact genome of
the Antarctic midge is likely an adaptation to an extreme environment.Nat Commun, 5 , 4611.4611-4611.4618.
https://doi.org/10.1038/ncomms5611
Kent, W. J. (2002). BLAT–the BLAST-like alignment tool. Genome
Res, 12 (4), 656-664. https://doi.org/10.1101/gr.229202
Kim, D., Langmead, B., & Salzberg, S. L. (2015). HISAT: a fast spliced
aligner with low memory requirements. Nat Methods, 12 (4),
357-360. https://doi.org/10.1038/nmeth.3317
Kozeretska, I., Serga, S., Kovalenko, P., Gorobchyshyn, V., & Convey,
P. (2022). Belgica antarctica (Diptera: Chironomidae): A natural model
organism for extreme environments. Insect Sci, 29 (1), 2-20.
https://doi.org/10.1111/1744-7917.12925
Kuranaga, E., Kanuka, H., Igaki, T., Sawamoto, K., Ichijo, H., Okano,
H., & Miura, M. (2002). Reaper-mediated inhibition of DIAP1-induced
DTRAF1 degradation results in activation of JNK in Drosophila. Nat
Cell Biol, 4 (9), 705-710. https://doi.org/10.1038/ncb842
Kutsenko, A., Svensson, T., Nystedt, B., Lundeberg, J., Björk, P.,
Sonnhammer, E., & Giacomello, S. (2014). The Chironomus tentans genome
sequence and the organization of the Balbiani ring genes. BMC
Genomics, 15 , 819. https://doi.org/10.1186/1471-2164-15-819
Lacerda, A. C., Gusmao, G. A., & Hamada, N. (2014). Tests of chronic
and acute toxicity of crude oil on larvae of Chironomus kiiensis
Tokunaga (Diptera: Chironomidae). Braz J Biol, 74 (3 Suppl 1),
70-77. https://doi.org/10.1590/1519-6984.24012
Li, S., Zhu, S., Jia, Q., Yuan, D., Ren, C., Li, K., Zhan, S. (2018).
The genomic and functional landscapes of developmental plasticity in the
American cockroach. Nat Commun, 9 (1), 1008.
https://doi.org/10.1038/s41467-018-03281-1
Love, M. I., Huber, W., & Anders, S. (2014). Moderated estimation of
fold change and dispersion for RNA-seq data with DESeq2. Genome
Biol, 15 (12), 550. https://doi.org/10.1186/s13059-014-0550-8
Lowe, T. M., & Eddy, S. R. (1997). tRNAscan-SE: a program for improved
detection of transfer RNA genes in genomic sequence. Nucleic acids
research, 25 (5), 955-964. https://doi.org/10.1093/nar/25.5.955
Lu, K., Song, Y., & Zeng, R. (2021). The role of cytochrome
P450-mediated detoxification in insect adaptation to xenobiotics.Curr Opin Insect Sci, 43 , 103-107.
https://doi.org/10.1016/j.cois.2020.11.004
Manni, M., Berkeley, M. R., Seppey, M., Simão, F. A., & Zdobnov, E. M.
(2021). BUSCO update: novel and streamlined workflows along with broader
and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic,
and viral genomes. Molecular Biology and Evolution .
https://doi.org/10.1093/molbev/msab199
Marcais, G., & Kingsford, C. (2011). A fast, lock-free approach for
efficient parallel counting of occurrences of k-mers.Bioinformatics, 27 (6), 764-770.
https://doi.org/10.1093/bioinformatics/btr011
Marti´n-Blanco, E., Pastor-Pareja, J. C., & Garci´a-Bellido, A. (2000).
JNK and decapentaplegic signaling control adhesiveness and cytoskeleton
dynamics during thorax closure in Drosophila. PNAS, 97 (14),
7888-7893. https://doi.org/10.1073/pnas.97.14.7888
Martin, J. (2017). Chironomus strenzkei Fittkau, 1968 is a junior
synonym of C. striatipennis Kieffer, 1910. CHIRONOMUS Journal of
Chironomidae Research, 30 , 19-25.
https://doi.org/10.5324/cjcr.v0i30.2190
Martinez-Paz, P. (2018). Response of detoxification system genes on
Chironomus riparius aquatic larvae after antibacterial agent triclosan
exposures. Sci Total Environ, 624 , 1-8.
https://doi.org/10.1016/j.scitotenv.2017.12.107
Miki, T., Shinohara, T., Chafino, S., Noji, S., & Tomioka, K. (2020).
Photoperiod and temperature separately regulate nymphal development
through JH and insulin/TOR signaling pathways in an insect. Proc
Natl Acad Sci U S A, 117 (10), 5525-5531.
https://doi.org/10.1073/pnas.1922747117
Nawrocki, E. P., & Eddy, S. R. (2013). Infernal 1.1: 100-fold faster
RNA homology searches. Bioinformatics, 29 (22), 2933-2935.
https://doi.org/10.1093/bioinformatics/btt509
Neff, R. A., Wang, M., Vatansever, S., Guo, L., Ming, C., Wang, Q.,
Horgusluoglu-Moloch, E. (2021). Molecular subtyping of Alzheimer’s
disease using RNA sequencing data reveals novel mechanisms and targets.SCIENCE ADVANCES, 7 , 5398. https://doi.org/10.1126/sciadv.abb5398
Nguyen, L. T., Schmidt, H. A., von Haeseler, A., & Minh, B. Q. (2015).
IQ-TREE: a fast and effective stochastic algorithm for estimating
maximum-likelihood phylogenies. Mol Biol Evol, 32 (1), 268-274.
https://doi.org/10.1093/molbev/msu300
Pertea, M., Pertea, G. M., Antonescu, C. M., Chang, T. C., Mendell, J.
T., & Salzberg, S. L. (2015). StringTie enables improved reconstruction
of a transcriptome from RNA-seq reads. Nat Biotechnol, 33 (3),
290-295. https://doi.org/10.1038/nbt.3122
Pinder, L. c. V. (1986). BIOLOGY OF FRESHWATER CHIRONOMIDAE. Ann.
Rev. Entomol, 31 , 1-23.
https://doi.org/10.1146/annurev.en.31.010186.000245
Platzer-Schltz, I., & Welsch, U. (1969). Zur Entstehung und
Feinstruktur der peritrophischen Membran der Larven von Chironomus
strenzkei Fittkau (Diptera). Z. Zellforsch, 100 , 594-605.
https://doi.org/10.1007/BF00344378
Platzer-Schultz, I. (1970). Zur Atmungsphysiologie verschiedener
Entwicklungsstadien von Chironomus strenzkei Fittkau (Diptera). Z.
vergl. Physiologie, 67 , 179-185. https://doi.org/10.1007/BF00298526
Price, A. L., Jones, N. C., & Pevzner, P. A. (2005). De novo
identification of repeat families in large genomes.Bioinformatics, 21 Suppl 1 , 351-358.
https://doi.org/10.1093/bioinformatics/bti1018
Rethmeier, N., Seurinck, J., Montagu, M. V., & Cornelissen, M. (1997).
Intron-mediated enhancement of transgene expression in maize is a
nuclear, gene-dependent process. The Plant Journal, 12 (4),
895-899. https://doi.org/10.1046/j.1365-313x.1997.12040895.x
Rose, A. B. (2004). The effect of intron location on intron-mediated
enhancement of gene expression in Arabidopsis. The Plant Journal,
40 (5), 744-751. https://doi.org/10.1111/j.1365-313X.2004.02247.x
Rose, A. B., & Beliakoff, J. A. (2000). Intron-Mediated Enhancement of
Gene Expression Independent of Unique Intron Sequences and Splicing.Plant physiology, 122 , 535-542.
Rozewicki, J., Li, S., Amada, K. M., Standley, D. M., & Katoh, K.
(2019). MAFFT-DASH: integrated protein sequence and structural
alignment. Nucleic Acids Res, 47 (W1), 5-10.
https://doi.org/10.1093/nar/gkz342
Saffarini, D. A., Trewitt, P. M., Luhm, R. A., & Bergtrom, G. (1991).
Differential regulation of insect globin and actin mRNAs during larval
development in Chironomus thummi. Gene, 101 , 215-222.
https://doi.org/10.1016/0378-1119(91)90414-7
Santos, C. G., Humann, F. C., & Hartfelder, K. (2019). Juvenile hormone
signaling in insect oogenesis. Curr Opin Insect Sci, 31 , 43-48.
https://doi.org/10.1016/j.cois.2018.07.010
Shaikhutdinov, N., & Gusev, O. (2022). Chironomid midges (Diptera)
provide insights into genome evolution in extreme environments.Curr Opin Insect Sci, 49 , 101-107.
https://doi.org/10.1016/j.cois.2021.12.009
Smital, T., Luckenbach, T., Sauerborn, R., Hamdoun, A. M., Vega, R. L.,
& Epel, D. (2004). Emerging contaminants—pesticides, PPCPs, microbial
degradation products and natural substances as inhibitors of
multixenobiotic defense in aquatic organisms. Mutation
Research/Fundamental and Molecular Mechanisms of Mutagenesis, 552 (1-2),
101-117. https://doi.org/10.1016/j.mrfmmm.2004.06.006
Smith, R. (2014). Limnology—Inland water ecosystems. the North
American Benthological Society, 21 (2), 346-347.
Sogame, Y., & Kikawada, T. (2017). Current findings on the molecular
mechanisms underlying anhydrobiosis in Polypedilum vanderplanki.Current Opinion in Insect Science, 19 , 16-21.
https://doi.org/10.1016/j.cois.2016.10.008
Stanke, M., Keller, O., Gunduz, I., Hayes, A., Waack, S., &
Morgenstern, B. (2006). AUGUSTUS: ab initio prediction of alternative
transcripts. Nucleic Acids Res, 34 (Web Server issue), 435-439.
https://doi.org/10.1093/nar/gkl200
Strand, K., Knapp, J. E., Bhyravbhatla, B., & Royer, W. E., Jr. (2004).
Crystal structure of the hemoglobin dodecamer from Lumbricus
erythrocruorin: allosteric core of giant annelid respiratory complexes.J Mol Biol, 344 (1), 119-134.
https://doi.org/10.1016/j.jmb.2004.08.094
Subramanian, B., Gao, S., Lercher, M. J., Hu, S., & Chen, W. H. (2019).
Evolview v3: a webserver for visualization, annotation, and management
of phylogenetic trees. Nucleic Acids Res, 47 (W1), 270-275.
https://doi.org/10.1093/nar/gkz357
Sun, X., Liu, W., Li, R., Zhao, C., Pan, L., & Yan, C. (2021). A
chromosome level genome assembly of Propsilocerus akamusi to understand
its response to heavy metal exposure. Mol Ecol Resour, 21 (6),
1996-2012. https://doi.org/10.1111/1755-0998.13377
Trapnell, C., Roberts, A., Goff, L., Pertea, G., Kim, D., Kelley, D. R.,
Pachter, L. (2012). Differential gene and transcript expression analysis
of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc,
7 (3), 562-578. https://doi.org/10.1038/nprot.2012.016
Vicoso, B., & Bachtrog, D. (2015). Numerous transitions of sex
chromosomes in Diptera. PLoS Biol, 13 (4), 1002078.
https://doi.org/10.1371/journal.pbio.1002078
Vurture, G. W., Sedlazeck, F. J., Nattestad, M., Underwood, C. J., Fang,
H., Gurtowski, J., & Schatz, M. C. (2017). GenomeScope: Fast
reference-free genome profiling from short reads. Bioinformatics,
33 (14), 2202-2204. https://doi.org/10.1093/bioinformatics/xxxxx
Wang, Y., Tang, H., Debarry, J. D., Tan, X., Li, J., Wang, X., . . .
Paterson, A. H. (2012). MCScanX: a toolkit for detection and
evolutionary analysis of gene synteny and collinearity. Nucleic
Acids Res, 40 (7), 49. https://doi.org/10.1093/nar/gkr1293
Wu, Z., Li, R., Zhang, Y., & Zhu, L. (2021). Insights into the impacts
of bioturbation by multiple benthic organisms on the bioavailability and
toxic effects of perfluorooctane sulfonate in sediment. J Hazard
Mater, 420 , 126675. https://doi.org/10.1016/j.jhazmat.2021.126675
Xiao, Y., Xiao, Z., Ma, D., Liu, J., & Li, J. (2019). Genome sequence
of the barred knifejaw Oplegnathus fasciatus (Temminck & Schlegel,
1844): the first chromosome-level draft genome in the family
Oplegnathidae. Gigascience, 8 (3).
https://doi.org/10.1093/gigascience/giz013
Xu, Z., & Wang, H. (2007). LTR_FINDER: an efficient tool for the
prediction of full-length LTR retrotransposons. Nucleic Acids Res,
35 (Web Server issue), 265-268. https://doi.org/10.1093/nar/gkm286
Yang, Z. (1997). PAML: a program package for phylogenetic analysis by
maximum likelihood. CABIOS APPLICATIONS NOTE, 13 (5), 555-556.
Zeitlinger, J., & Bohmann, D. (1999). Thorax closure in Drosophila:
involvement of Fos and the JNK pathway. Great Britain, 126 ,
3947-3956. https://doi.org/10.1007/s004290050284
Zhang, Y., Fu, Y., Wang, Q., Liu, X., Li, Q., & Chen, J. (2020).
Transcriptome analysis reveals rapid defence responses in wheat induced
by phytotoxic aphid Schizaphis graminum feeding. BMC Genomics,
21 (1), 339. https://doi.org/10.1186/s12864-020-6743-5
Zhang, Y., Yang, J., Simpson, S. L., Wang, Y., & Zhu, L. (2019).
Application of diffusive gradients in thin films (DGT) and
simultaneously extracted metals (SEM) for evaluating bioavailability of
metal contaminants in the sediments of Taihu Lake, China.Ecotoxicol Environ Saf, 184 , 109627.109621-109627.109628.
https://doi.org/10.1016/j.ecoenv.2019.109627
Zhang, Y., Zhang, G. Q., Zhang, D., Liu, X. D., Xu, X. Y., Sun, W. H., .
. . Liu, Z. J. (2021). Chromosome-scale assembly of the Dendrobium
chrysotoxum genome enhances the understanding of orchid evolution.Hortic Res, 8 (1), 183. https://doi.org/10.1038/s41438-021-00621-z