Figure 2. Recombination analysis generated by RDP software and genetic organization of recombinant (19NPT29). Bootscanning analysis was performed with 19NPT29 as query sequence using a sliding window of 200 nt moving in 20 nt steps. A purple shaded area of 19NPT29 indicates the recombination region at positions 508-1356. The phylogenetic trees were constructed based on recombinant region 1 (purple shaded) and recombinant region 2 (dark green shaded) to confirm recombination event.