Table 1. Minibarcodes tested for amplifying aquaculture feeds and
reference samples.
Locus |
Product size |
Barcoding gene |
Annealing temperature |
Reference |
Target
taxa |
AquaF2/C_FishR1 |
185 |
COI |
51 |
Valdez-Moreno et al. 2019 |
fishes |
AquaF3/C_FishR1 |
185 |
COI |
50 |
Valdez-Moreno et al. 2019 |
fishes |
FishF2/Shark COI-MINIR |
127 |
COI |
52 |
Fields et al. 2015, Boussarie
et al. 2018 |
elasmobranchs |
nsCOIFo |
124 |
COI |
43 |
Günther et al. 2018 |
fishes |
Fish_miniA |
129 |
COI |
46 |
Shokralla et al. 2015 |
fishes |
Crust2* |
106 |
COI |
55 |
Fernandes et al. 2017 |
crustaceans |
MiniBar |
130 |
COI |
46 |
Meusnier et al. 2008 |
metazoa |
Plank_COI |
127 |
COI |
52 |
Berry et al. 2017 |
plankton |
Shark474F/FishR1+FishR2 |
200 |
COI |
52 |
Cardenosa et al. 2017 |
elasmobranchs |
16S_Fish* |
220 |
16S |
67 |
McInnes et al. 2017 |
fishes |
Crust_16S |
170 |
16S |
51 |
Berry et al. 2017 |
crustaceans |
Ceph_16S |
200 |
16S |
55 |
Berry et al. 2017 |
cephalopods |
L2513/H2714 |
244 |
16S |
57 |
Kitano et al. 2007 |
vertebrates |
CEP |
206 |
16S |
58 |
Giusti et al. 2017 |
fishes |
16Spc |
295 |
16S |
53 |
Giusti et al. 2017 |
fishes |
16Svar |
209 |
16S |
58 |
Giusti et al. 2017 |
fishes |
16S-H1 |
120 |
16S |
61 |
Horreo et al. 2013 |
fishes |
MiFish |
185 |
12S |
58 |
Miya et al. 2015 |
fishes |
Teleo* |
102 |
12S |
55 |
Valentini et al 2016 |
fishes |
18S_SSU3 |
170 |
18S |
67 |
McInnes et al. 2017 |
metazoa |
18Sn4 |
180 |
18S |
55 |
Machida & Knowlton 2012 |
metazoa |
Short28S |
203 |
28S |
59 |
Vestheim and Jarman 2008 |
zooplankton |