References
Aberer, A. J., Kobert, K., and Stamatakis, A. (2014). Exabayes: Massively parallel bayesian tree inference for the whole-genome era.Molecular Biology and Evolution 31 , 2553–2556. doi:10.1093/molbev/msu236
Adams, S. A., and Tsutsui, N. D. (2020). The evolution of species recognition labels in insects. Philosophical Transactions of the Royal Society B 375 , 20190476. doi:10.1098/rstb.2019.0476
Aguilar-Velasco, R. G., Poteaux, C., Meza-Lázaro, R., Lachaud, J-P., Dubovikoff, D., and Zaldívar-Riverón, A. (2016). Uncovering species boundaries in the Neotropical ant complex Ectatomma ruidum(Ectatomminae) under the presence of nuclear mitochondrial paralogues.Zoological Journal of the Linnean Society 178 , 226–240. doi:10.1111/zoj.12407
Andermann, T., Fernandes, A. M., Olsson, U., Töpel, M., Pfeil, B., Oxelman, B., Aleixo, A., Faircloth, B. C., and Antonelli, A. (2019). Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements. Systematic Biology 68 , 32–46. doi:10.1093/sysbio/syy039
Anderson, M. J. (2017). Permutational Multivariate Analysis of Variance (PERMANOVA). Wiley StatsRef: Statistics Reference Online , 1–15. doi:10.1002/9781118445112.stat07841
Angers, B., Leung, C., Vétil, R., Deremiens, L., and Vergilino, R. (2018). The effects of allospecific mitochondrial genome on the fitness of northern redbelly dace (Chrosomus eos). Ecology and Evolution8 , 3311–3321. doi:10.1002/ece3.3922
Antweb. Version 8.64.2. California Academy of Science, online at https://www.antweb.org. Accessed 4 September 2021.
Bagnères, A.G. and Wicker-Thomas C (2010) Chemical taxonomy with hydrocarbons. In: Blomquist, G.J. and Bagnères, A.G. (eds). Insect hydrocarbons: biology, biochemistry and chemical ecology. Cambridge University Press, Cambridge, pp 121–162.
Bayona-Vásquez, N. J., Glenn, T. C., Kieran, T. J., Pierson, T. W., Hoffberg, S. L., Scott, P. A., Bentley, K. E., Finger, J. W., Louha, S., Troendle, N., Diaz-Jaimes, P., Mauricio, R., and Faircloth, B. C. (2019). Adapterama III: Quadruple-indexed, double/triple-enzyme RADseq libraries (2RAD/3RAD). PeerJ 2019 , 1–25. doi:10.7717/peerj.7724
Birky, C. W. (1995). Uniparental inheritance of mitochondrial and chloroplast genes: mechanisms and evolution. Proceedings of the National Academy of Sciences 92 , 11331-11338. doi:10.1073/pnas.92.25.11331
Blier, P. U., Dufresne, F., and Burton, R. S. (2001). Natural selection and the evolution of mtDNA-encoded peptides: evidence for intergenomic co-adaptation. TRENDS in Genetics 17 , 400–406. doi:10.1016/s0168-9525(01)02338-1
Blomquist, G. J., and Bagnères, A.G. (2010). ‘Insect hydrocarbons: biology, biochemistry, and chemical ecology’. (Cambridge University Press.)
Boomsma, J. J., and Nash, D. R. (2014). Evolution: sympatric speciation the eusocial way. Current Biology 24 , R798–R800. doi:10.1016/j.cub.2014.07.072
Bouckaert, R., Heled, J., Kühnert, D., Vaughan, T., Wu, C. H., Xie, D., Suchard, M. A., Rambaut, A., and Drummond, A. J. (2014). BEAST 2: A Software Platform for Bayesian Evolutionary Analysis. PLoS Computational Biology 10 , 1–6. doi:10.1371/journal.pcbi.1003537
Bradbury, J. W., Vehrencamp, S. L., and others (1998). Principles of animal communication. Sinauer Associates Inc.
Branstetter, M. G., Danforth, B. N., Pitts, J. P., Faircloth, B. C., Ward, P. S., Buffington, M. L., Gates, M. W., Kula, R. R., and Brady, S. G. (2017). Phylogenomic Insights into the Evolution of Stinging Wasps and the Origins of Ants and Bees. Current Biology 27 , 1019–1025. doi:10.1016/j.cub.2017.03.027
Breed, M. D., Abel, P., Bleuze, T. J., and Denton, S. E. (1990). Thievery, home ranges, and nestmate recognition in Ectatomma ruidum . Oecologia 84 , 117-121. doi:10.1007/BF00665604
Brodetzki, T. R., Inbar, S., Cohen, P., Aron, S., Privman, E., and Hefetz, A. (2019). the Interplay between Incipient species and social polymorphism in the Desert Ant Cataglyphis. Scientific Reports9 , 1–14.
Brown Jr, K. S. (1981). The biology of Heliconius and related genera.Annual Review of Entomology 26 , 427–457.
Bryant, D., Bouckaert, R., Felsenstein, J., Rosenberg, N. A., and Roychoudhury, A. (2012). Inferring species trees directly from biallelic genetic markers: Bypassing gene trees in a full coalescent analysis.Molecular Biology and Evolution 29 , 1917–1932. doi:10.1093/molbev/mss086
Bryant, D., and Moulton, V. (2004). Neighbor-net: an agglomerative method for the construction of phylogenetic networks. Molecular Biology and Evolution , 21 , 255-265. doi:10.1093/molbev/msh018
Burton, R. S., and Barreto, F. S. (2012). A disproportionate role for mtDNA in Dobzhansky-Muller incompatibilities? Molecular Ecology21 , 4942–4957. doi:10.1111/mec.12006
Burton, R. S., Pereira, R. J., and Barreto, F. S. (2013). Cytonuclear genomic interactions and hybrid breakdown. Annual Review of Ecology, Evolution, and Systematics 44 , 281–302. doi:10.1146/annurev-ecolsys-110512-135758
Castresana, J. (2000). Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular biology and Evolution 17 , 540–552. doi:10.1093/oxfordjournals.molbev.a026334
Catchen, J., Hohenlohe, P. A., Bassham, S., Amores, A., and Cresko, W. A. (2013). Stacks: An analysis tool set for population genomics.Molecular Ecology 22 , 3124–3140. doi:10.1111/mec.12354
Catchen, J. M., Amores, A., Hohenlohe, P., Cresko, W., and Postlethwait, J. H. (2011). Stacks: building and genotyping loci de novo from short-read sequences. G3: Genes| Genomes| Genetics 1 , 171–182. doi:10.1534/g3.111.000240
Chifman, J., and Kubatko, L. (2014). Quartet inference from SNP data under the coalescent model. Bioinformatics 30 , 3317–3324. doi:10.1093/bioinformatics/btu530
Chou, J. Y., and Leu, J. Y. (2010). Speciation through cytonuclear incompatibility: Insights from yeast and implications for higher eukaryotes. BioEssays 32 , 401–411. doi:10.1002/bies.200900162
Chou, J. Y., and Leu, J. Y. (2015). The Red Queen in mitochondria: Cyto-nuclear co-evolution, hybrid breakdown and human disease.Frontiers in Genetics 6 , 1–8. doi:10.3389/fgene.2015.00187
Chung, H., and Carroll, S. B. (2015). Wax, sex and the origin of species: Dual roles of insect cuticular hydrocarbons in adaptation and mating. BioEssays 37 , 822–830. doi:10.1002/bies.201500014
Clement, M., Snell, Q., Walker, P., Posada, D., and Crandall, K. (1997). TCS networks.pdf.
Cook, S. C., and Behmer, S. T. (2010). Macronutrient regulation in the tropical terrestrial ant Ectatomma ruidum (Formicidae): A field study in Costa Rica. Biotropica 42 , 135–139. doi:10.1111/j.1744-7429.2009.00616.x
Corbara, B., Lachaud, J‐P., and Fresneau, D. (1989). Individual Variability, Social Structure and Division of Labour in the Ponerine Ant Ectatomma ruidum Roger (Hymenoptera, Formicidae). Ethology82 , 89–100. doi:10.1111/j.1439-0310.1989.tb00490.x
Coyne, J. A. and Orr, H. A. (2004). ‘Speciation’. (Sinauer Associates Sunderland, MA.)
Crespi, B., and Nosil, P. (2013). Conflictual speciation: Species formation via genomic conflict. Trends in Ecology and Evolution28 , 48–57. doi:10.1016/j.tree.2012.08.015
Dayrat, B. (2005). Towards integrative taxonomy. Biological Journal of the Linnean Society 85 , 407–417. doi: 10.1111/j.1095-8312.2005.00503.x
Dronnet, S., Lohou, C., Christides, J.-P., and Bagnères, A.-G. (2006). Cuticular hydrocarbon composition reflects genetic relationship among colonies of the introduced termite Reticulitermes santonensisFeytaud. Journal of Chemical Ecology 32 , 1027–1042.
Eaton, D. A. R. (2014). PyRAD: Assembly of de novo RADseq loci for phylogenetic analyses. Bioinformatics 30 , 1844–1849. doi:10.1093/bioinformatics/btu121
Eaton, D. A. R., and Overcast, I. (2020). Ipyrad: Interactive assembly and analysis of RADseq datasets. Bioinformatics 36 , 2592–2594. doi:10.1093/bioinformatics/btz966
Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32 , 1792–1797. doi:10.1093/nar/gkh340
Edwards, D. L., and Knowles, L. L. (2014). Species detection and individual assignment in species delimitation: Can integrative data increase efficacy? Proceedings of the Royal Society B: Biological Sciences 281 . doi:10.1098/rspb.2013.2765
Emery, C. (1901). Notes sur les sous-familles des Dorylines et Ponérines (Famille des Formicides). Annales de la Société entomologique de Belgique 45: 32-54
Estrada, C., and Jiggins, C. D. (2002). Patterns of pollen feeding and habitat preference among Heliconius species. Ecological Entomology 27 , 448–456. doi:10.1046/j.1365-2311.2002.00434.x
Evanno, G., Regnaut, S., and Goudet, J. (2005). Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology , 14(8), 2611-2620.
Faircloth, B. C. (2017). Identifying conserved genomic elements and designing universal bait sets to enrich them. Methods in Ecology and Evolution 8 , 1103–1112. doi:10.1111/2041-210X.12754
Faircloth, B. C. (2013). Illumiprocessor: a trimmomatic wrapper for parallel adapter and quality trimming. See http://dx. doi. org/10.6079/J9ILL (accessed 24 September 2021) .
Faircloth, B. C. (2016). PHYLUCE is a software package for the analysis of conserved genomic loci. Bioinformatics 32 , 786–788. doi:10.1093/bioinformatics/btv646
Faircloth, B. C. (2021). Tutorial II: Phasing UCE data. https://phyluce.readthedocs.io/en/latest/tutorials/tutorial-2.html.
Faircloth, B. C., McCormack, J. E., Crawford, N. G., Harvey, M. G., Brumfield, R. T., and Glenn, T. C. (2012). Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales. Systematic Biology 61 , 717–726. doi:10.1093/sysbio/sys004
Flouri, T., Jiao, X., Rannala, B., and Yang, Z. (2018). Species tree inference with BPP using genomic sequences and the multispecies coalescent. Molecular Biology and Evolution 35 , 2585–2593. doi:10.1093/molbev/msy147
Gershoni, M., Templeton, A. R., and Mishmar, D. (2009). Mitochondrial bioenergetics as a major motive force of speciation. Bioessays31 , 642–650. doi: 10.1002/bies.200800139
Glenn, T. C., Nilsen, R. A., Kieran, T. J., Sanders, J. G., Bayona-Vásquez, N. J., Finger, J. W., Pierson, T. W., Bentley, K. E., Hoffberg, S. L., Louha, S., and others (2019). Adapterama I: universal stubs and primers for 384 unique dual-indexed or 147,456 combinatorially-indexed Illumina libraries (iTru \& iNext). PeerJ 7 , e7755. doi:10.7717/peerj.7755
Grummer, J. A., Bryson, R. W., and Reeder, T. W. (2014). Species delimitation using bayes factors: Simulations and application to theSceloporus scalaris species group (Squamata: Phrynosomatidae).Systematic Biology 63 , 119–133. doi:10.1093/sysbio/syt069
Grun, P. (1976). ‘Cytoplasmic genetics and evolution’. (Columbia University Press.)
Gyllenstrand, N., Gertsch, P. J., and Pamilo, P. (2002). Polymorphic microsatellite DNA markers in the ant Formica exsecta .Molecular Ecology Notes 2 , 67–69. doi:10.1046/j.1471-8286.2002.00152.x
Hakala, S. M., Perttu, S., and Helanterä, H. (2019). Evolution of dispersal in ants (Hymenoptera: Formicidae): A review on the dispersal strategies of sessile superorganisms. Myrmecological news29 . doi:10.25849/myrmecol.news_029:035
Harrison, R. G., and Larson, E. L. (2014). Hybridization, introgression, and the nature of species boundaries. Journal of Heredity105 , 795–809. doi:10.1093/jhered/esu033
Hartke, J., Sprenger, P. P., Sahm, J., Winterberg, H., Orivel, J., Baur, H., Beuerle, T., Schmitt, T., Feldmeyer, B., and Menzel, F. (2019). Cuticular hydrocarbons as potential mediators of cryptic species divergence in a mutualistic ant association. Ecology and Evolution 9 , 9160–9176. doi:10.1002/ece3.5464
Hebert, P. D. N., Cywinska, A., Ball, S. L., and Dewaard, J. R. (2003). Biological identifications through DNA barcodes. Proceedings of the Royal Society of London. Series B: Biological Sciences270 , 313–321. doi:10.1098/rspb.2002.2218
Hill, G. E. (2016). Mitonuclear coevolution as the genesis of speciation and the mitochondrial DNA barcode gap. Ecology and Evolution6 , 5831–5842. doi:10.1002/ece3.2338
Hill, G. E. (2015). Mitonuclear ecology. Molecular Biology and Evolution 32 , 1917–1927. doi:10.1093/molbev/msv104
Hill, G. E. (2018). Mitonuclear Mate Choice: A Missing Component of Sexual Selection Theory? BioEssays 40 , 1–10. doi:10.1002/bies.201700191
Hill, G. E. (2019). Reconciling the mitonuclear compatibility species concept with rampant mitochondrial introgression. Integrative and Comparative Biology 59 , 912–924. doi:10.1093/icb/icz019
Hill, G. E. (2017). The mitonuclear compatibility species concept.The Auk: Ornithological Advances 134 , 393–409. doi:10.1642/AUK-16-201.1
Hoang, D. T., Chernomor, O., Von Haeseler, A., Minh, B. Q., and Vinh, L. S. (2018). UFBoot2: improving the ultrafast bootstrap approximation.Molecular Biology and Evolution 35 , 518-522. doi:10.1093/molbev/msx281
Hochberg, M. E., Sinervo, B., and Brown, S. P. (2003). Socially mediated speciation. Evolution , 57 , 154-158. doi:10.1111/j.0014-3820.2003.tb00224.x
Howard, R. W., Pérez-Lachaud, G. and Lachaud, J-P. (2001) Cuticular hydrocarbons of Kapala sulcifacies (Hymenoptera: Eucharitidae) and its host, the ponerine ant Ectatomma ruidum (Hymenoptera: Formicidae). Annals of the Entomological Society of America94 : 707-716. doi:10.1603/0013-8746(2001)094[0707:CHOKSH]2.0.CO;2
Huson, D. H., and Bryant, D. (2006). Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution23 , 254-267. doi:10.1093/molbev/msj030
Ilut, D. C., Nydam, M. L., and Hare, M. P. (2014). Defining loci in restriction-based reduced representation genomic data from nonmodel species: sources of bias and diagnostics for optimal clustering.BioMed Research International , 2014. doi:10.1155/2014/675158
Johnstone, R. A., Cant, M. A., and Field, J. (2012). Sex-biased dispersal, haplodiploidy and the evolution of helping in social insects.Proceedings of the Royal Society B: Biological Sciences279 , 787–793. doi:10.1098/rspb.2011.1257
Kass, R. E., and Raftery, A. E. (1995). Bayes factors. Journal of the American Statistical Association 90 , 773-795.
Katoh, K., Rozewicki, J., and Yamada, K. D. (2019). MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics 20 , 1160–1166. doi:10.1093/bib/bbx108
Kalyaanamoorthy, S., Minh, B. Q., Wong, T. K., Von Haeseler, A., and Jermiin, L. S. (2017). ModelFinder: fast model selection for accurate phylogenetic estimates. Nature Methods 14 , 587-589. doi: 10.1038/nmeth.4285
Kugler, C., and Brown, W. L. (1982). Revisionary and other studies on the ant genus Ectatomma , including the descriptions of two new species. Estudios de revisión y de otros tipos en el género de hormigasEctatomma , incluyendo las descripciones de dos nuevas especies.Agriculture 24 , 1–7.
Kumar, S., Stecher, G., Li, M., Knyaz, C., and Tamura, K. (2018). MEGA X: molecular evolutionary genetics analysis across computing platforms.Molecular biology and evolution 35 , 1547–1549. doi:10.1093/molbev/msy096
Lachaud, J.-P. (1990). Foraging activity and diet in some neotropical ponerine ants. I. Ectatomma ruidum Roger (Hymenoptera, Formicidae). Foliae Entomologica Mexicana 78 , 241–256.
Lachaud, J. P., Cadena, A., Schatz, B., Pérez-Lachaud, G., and Ibarra-Núñez, G. (1999). Queen dimorphism and reproductive capacity in the ponerine ant, Ectatomma ruidum Roger. Oecologia 120 , 515–523. doi:10.1007/s004420050885
Lanfear, R., Frandsen, P. B., Wright, A. M., Senfeld, T., and Calcott, B. (2017). Partitionfinder 2: New methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Molecular Biology and Evolution 34 , 772–773. doi:10.1093/molbev/msw260
Leaché, A. D., and Bouckaert, R. R. (2018). Species trees and species delimitation with SNAPP: a tutorial and worked example. In Workshop on Population and Speciation Genomics, Český Krumlov.
Leaché, A. D., and Fujita, M. K. (2010). Bayesian species delimitation in West African forest geckos (Hemidactylus fasciatus).Proceedings of the Royal Society B: Biological Sciences277 , 3071-3077. doi:10.1098/rspb.2010.0662
Leaché, A. D., Fujita, M. K., Minin, V. N., and Bouckaert, R. R. (2014). Species delimitation using genome-wide SNP Data. Systematic Biology 63 , 534–542. doi:10.1093/sysbio/syu018
Leavitt, S. D., Moreau, C. S., and Lumbsch, H. T. (2015). The dynamic discipline of species delimitation: progress toward effectively recognizing species boundaries in natural populations. In ‘Recent advances in lichenology’. pp. 11–44. (Springer.)
Leigh, J. W., and Bryant, D. (2015). POPART: Full-feature software for haplotype network construction. Methods in Ecology and Evolution6 , 1110–1116. doi:10.1111/2041-210X.12410
Lenoir, J.C., Lachaud, J.P., Nettel, A., Fresneau, D., Poteaux, C. (2011). The role of the microgynes in the reproductive strategy of the neotropical ant Ectatomma ruidum . Naturwissenschaften . 98:347–356. doi:10.1007/s00114-011-0774-3
Leonhardt, S. D., Rasmussen, C., and Schmitt, T. (2013). Genes versus environment: Geography and phylogenetic relationships shape the chemical profiles of stingless bees on a global scale. Proceedings of the Royal Society B: Biological Sciences 280 , 7–9. doi:10.1098/rspb.2013.0680
Lucas, C., Fresneau, D., Kolmer, K., Heinze, J., Delabie, J. H. C., and Pho, D. B. (2002). A multidisciplinary approach to discriminating different taxa in the species complex Pachycondyla villosa(Formicidae). Biological Journal of the Linnean Society75 , 249–259. doi:10.1046/j.1095-8312.2002.00017.x
Macey, J. R., Pabinger, S., Barbieri, C. G., Buring, E. S., Gonzalez, V. L., Mulcahy, D. G., DeMeo, D. P., Urban, L., Hime, P. M., Prost, S., Elliot, A. N., and Gemmel, N. J. (2021). Evidence of two deeply divergent co-existing mitochondrial genomes in the Tuatara reveals an extremely complex genomic organization. Communications Biology4 , 116. doi:10.1038/s42003-020-01639-0
Mallet, J., Beltrán, M., Neukirchen, W., and Linares, M. (2007). Natural hybridization in heliconiine butterflies: the species boundary as a continuum. BMC Evolutionary Biology 7 , 1–16. doi:10.1186/1471-2148-7-28
Meza-Lázaro, R. N., Poteaux, C., Bayona-Vásquez, N. J., Branstetter, M. G., and Zaldívar-Riverón, A. (2018). Extensive mitochondrial heteroplasmy in the neotropical ants of the Ectatomma ruidumcomplex (Formicidae: Ectatomminae). Mitochondrial DNA Part A29 , 1203–1214. doi:10.1080/24701394.2018.1431228
Miller, M. A., Pfeiffer, W., and Schwartz, T. (2010). Creating the CIPRES Science Gateway for inference of large phylogenetic trees.2010 Gateway Computing Environments Workshop, GCE 2010 . doi:10.1109/GCE.2010.5676129
Mirarab, S., Reaz, R., Bayzid, M. S., Zimmermann, T., S. Swenson, M., and Warnow, T. (2014). ASTRAL: Genome-scale coalescent-based species tree estimation. Bioinformatics 30 , 541–548. doi:10.1093/bioinformatics/btu462
Mirarab, S., and Warnow, T. (2015). ASTRAL-II: Coalescent-based species tree estimation with many hundreds of taxa and thousands of genes.Bioinformatics 31 , i44–i52. doi:10.1093/bioinformatics/btv234
Mullen, S. P., and Shaw, K. L. (2014). Insect speciation rules: unifying concepts in speciation research. Annual Review of Entomology59 , 339–361. doi:10.1146/annurev-ento-120710-100621
Nguyen, L. T., Schmidt, H. A., Von Haeseler, A., and Minh, B. Q. (2015). IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular biology and evolution , 32(1), 268-274. doi:10.1093/molbev/msu300
Oksanen, J., Blanchet, F. G., Kindt, R., Legendre, P., Minchin, P. R., O’hara, R. B., Simpson, G. L., Solymos, P., Stevens, M. H. H., and Wagner, H. (2015). Vegan: Community Ecology Package. R package version 2.0-10. 2013.
Padial, J. M., Miralles, A., la Riva, I., and Vences, M. (2010). The integrative future of taxonomy. Frontiers in zoology 7 , 1–14. doi: 10.1186/1742-9994-7-16
Pamilo, P., and Rosengren, R. (1984). Evolution of nesting strategies of ants: genetic evidence from different population types of Formicaants. Biological Journal of the Linnean Society 21 , 331–348. doi: 10.1111/j.1095-8312.1984.tb00370.x
Pante, E., Schoelinck, C., and Puillandre, N. (2015). From integrative taxonomy to species description: one step beyond. Systematic Biology 64 , 152–160. doi: 10.1093/sysbio/syu083
Pattengale, N. D., Alipour, M., Bininda-Emonds, O. R. P., Moret, B. M. E., and Stamatakis, A. (2010). How many bootstrap replicates are necessary? Journal of Computational Biology 17 , 337–354. doi:10.1089/cmb.2009.0179
Peña-Carrillo, K. I., Poteaux, C., Leroy, C., Meza-Lázaro, R. N., Lachaud, J. P., Zaldívar-Riverón, A., and Lorenzi, M. C. (2021a). Highly divergent cuticular hydrocarbon profiles in the clepotobiotic ants of the Ectatomma ruidum species complex. Chemoecology31 , 125–135. doi:10.1007/s00049-020-00334-0.
Peña-Carrillo, K. I., Lorenzi, M. C., Brault, M., Devienne, P., Lachaud, J. P., Pavan, G., Poteaux, C. (2021b). A new putative species in theEctatomma ruidum complex (Formicidae: Ectatomminae) produces a species-specific distress call. Bioacustics , DOI: 10.1080/09524622.2021.1938226.
Pfennig, D. W., Wund, M. A., Snell-Rood, E. C., Cruickshank, T., Schlichting, C. D., and Moczek, A. P. (2010). Phenotypic plasticity’s impacts on diversification and speciation. Trends in Ecology and Evolution 25 , 459–467. doi:10.1016/j.tree.2010.05.006
Pratt, S. C. (1989). Recruitment and other communication behavior in the ponerine ant Ectatomma ruidum . Ethology 81 , 313–331. doi: 10.1111/j.1439-0310.1989.tb00777.x
Presgraves, D. C. (2010). Speciation genetics: Search for the missing snowball. Current Biology 20 , R1073–R1074. doi:10.1016/j.cub.2010.10.056
Pritchard, J. K., Stephens, M., and Donnelly, P. (2000). Inference of population structure using multilocus genotype data. Genetics155 , 945–959. doi:10.1093/genetics/155.2.945
De Queiroz, K. (2007). Species concepts and species delimitation.Systematic biology 56 , 879–886. doi:10.1080/10635150701701083
Radzvilavicius, A. L., Lane, N., and Pomiankowski, A. (2017). Sexual conflict explains the extraordinary diversity of mechanisms regulating mitochondrial inheritance. BMC Biology 15 , 1–12. doi:10.1186/s12915-017-0437-8
Rambaut, A., Drummond, A. J., Xie, D., Baele, G., and Suchard, M. A. (2018). Posterior summarization on Bayesian phylogenetics using Tracer 1.7. Systematic Biology 67 , 901-904. doi: 10.1093/sysbio/syy032.
Riera-Valera, M. A., and Pérez-Sánchez, A. J. (2009). Notas acerca de la dieta de Ectatomma ruidum (Roger 1861) (Hymenoptera: Formicidae: Ectatomminae) en un jardín venezolano. Boletín Sociedad Entomológica Aragonesa 44 , 550–552.
Robison, G. A., Balvin, O., Schal, C., Vargo, E. L., and Booth, W. (2015). Extensive mitochondrial heteroplasmy in natural populations of a resurging human pest, the bed bug (Hemiptera: Cimicidae). Journal of Medical Entomology 52 , 734-738. doi: 10.1093/jme/tjv055
Rohland, N., and Reich, D. (2012). Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture. Genome research 22 , 939-946. doi:10.1101/gr.128124.111
Roger, J. (1860). Die Ponera-artigen Ameisen. Berliner Entomologische Zeitschrift 4 , 278–312.
Santamaría, C., Domínguez Haydar, Y., and Armbrecht, I. (2009). Cambios en la distribución de nidos y abundancia de la hormiga Ectatomma ruidum (Roger 1861) en dos zonas de Colombia. Boletín del Museo de Entomología de la Universidad del Valle 10 , 10–18.
Sato, M., and Sato, K. (2013). Maternal inheritance of mitochondrial DNA by diverse mechanisms to eliminate paternal mitochondrial DNA.Biochimica et Biophysica Acta - Molecular Cell Research1833 , 1979–1984. doi:10.1016/j.bbamcr.2013.03.010
Savarit, F., Sureau, G., Cobb, M., and Ferveur, J. F. (1999). Genetic elimination of known pheromones reveals the fundamental chemical bases of mating and isolation in Drosophila. Proceedings of the National Academy of Sciences of the United States of America 96 , 9015–9020. doi:10.1073/pnas.96.16.9015
Schlick-Steiner, B. C., Steiner, F. M., Seifert, B., Stauffer, C., Christian, E., and Crozier, R. H. (2010). Integrative taxonomy: a multisource approach to exploring biodiversity. Annual review of entomology 55 , 421–438. doi: 10.1146/annurev-ento-112408-085432
Seehausen, O., Butlin, R. K., Keller, I., Wagner, C. E., Boughman, J. W., Hohenlohe, P. A., Peichel, C. L., Saetre, G.-P., Bank, C., Brännström, Å., et al. (2014). Genomics and the origin of species.Nature Reviews Genetics 15 , 176–192. doi:10.1038/nrg3644
Seifert, B. (2010). Intranidal mating, gyne polymorphism, polygyny, and supercoloniality as factors for sympatric and parapatric speciation in ants. Ecological Entomology 35 , 33–40.
Seo, T. K. (2008). Calculating bootstrap probabilities of phylogeny using multilocus sequence data. Molecular Biology and Evolution25 , 960–971. doi:10.1093/molbev/msn043
Seppä, P., and Pamilo, P. (1995). Gene flow and population viscosity in Myrmica ants. Heredity , 74(2), 200-209. doi: 10.1038/hdy.1995.28
Simpson, J. T., Wong, K., Jackman, S. D., Schein, J. E., Jones, S. J. M., and Birol, I. (2009). ABySS: a parallel assembler for short read sequence data. Genome research 19 , 1117–1123. doi:10.1101/gr.089532.108
Sloan, D. B. (2015). Using plants to elucidate the mechanisms of cytonuclear co-evolution. New Phytologist 205 , 1040–1046. doi:10.1111/nph.12835
Smadja, C., and Butlin, R. K. (2009). On the scent of speciation: The chemosensory system and its role in premating isolation. Heredity102 , 77–97. doi:10.1038/hdy.2008.55
Smiley, J. (1978). Plant chemistry and the evolution of host specificity: new evidence from Heliconius and Passiflora. Science201 , 745–747. doi:10.1126/science.201.4357.745
Snellings, Y., Herrera, B., Wildemann, B., Beelen, M., Zwarts, L., Wenseleers, T., and Callaerts, P. (2018). The role of cuticular hydrocarbons in mate recognition in Drosophila suzukii. Scientific Reports 8 , 1–11. doi:10.1038/s41598-018-23189-6
Song, H., Moulton, M. J., and Whiting, M. F. (2014). Rampant nuclear insertion of mtDNA across diverse lineages with in Orthoptera (Insecta).PLoS ONE 9 , 41–43. doi:10.1371/journal.pone.0110508
Sprenger, P. P., and Menzel, F. 2020. Cuticular hydrocarbons in ants (Hymenoptera: Formicidae) and other insects: how and why they differ among individuals, colonies, and species. Myrmecol. News 30: 1-26. doi: 10.25849/myrmecol.news_030:001
Stamatakis, A. (2014). RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics30 , 1312–1313. doi:10.1093/bioinformatics/btu033
Swofford, D. L. (2003). PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
Talavera, G., and Castresana, J. (2007). Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Systematic biology 56 , 564–577. doi:10.1080/10635150701472164
Trifinopoulos, J., Nguyen, L. T., von Haeseler, A., and Minh, B. Q. (2016). W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic acids research , 44(W1), W232-W235. doi:10.1093/nar/gkw256
Will, K. W., Mishler, B. D., and Wheeler, Q. D. (2005). The perils of DNA barcoding and the need for integrative taxonomy. Systematic biology 54 , 844–851. doi:10.1080/10635150500354878
Wollenberg Valero, K. C., Marshall, J. C., Bastiaans, E., Caccone, A., Camargo, A., Morando, M., Niemiller, M. L., Pabijan, M., Russello, M. A., Sinervo, B., and others (2019). Patterns, mechanisms and genetics of speciation in reptiles and amphibians. Genes 10 , 646. doi:10.3390/genes10090646
Yang, Z., and Rannala, B. (2010). Bayesian species delimitation using multilocus sequence data. Proceedings of the National Academy of Sciences of the United States of America 107 , 9264–9269. doi:10.1073/pnas.0913022107
Yang, Z., and Rannala, B. (2014). Unguided species delimitation using DNA sequence data from multiple loci. Molecular Biology and Evolution 31 , 3125–3135. doi:10.1093/molbev/msu279
Zaidi, A. A., and Makova, K. D. (2019). Investigating mitonuclear interactions in human admixed populations. Nature ecology \and evolution 3 , 213–222. 10.1038/s41559-018-0766-1
van Zweden JS, d’Ettorre P (2010) Nestmate recognition in social insects and the role of hydrocarbons. In: Blomquist GJ, Bagnères A-G (eds) Insect hydrocarbons: biology, biochemistry and chemical ecology. Cambridge University Press, Cambridge, pp 222–243.
White, D. J., Wolff, J. N., Pierson, M., and Gemmell, N. J. (2008). Revealing the hidden complexities of mtDNA inheritance. Molecular Ecology, 17(23), 4925-4942. doi: 10.1111/j.1365-294X.2008.03982.x