References
Blasi, U., Linke, R. P., & Lubitz, W.
(1989). Evidence for membrane-bound oligomerization of bacteriophage phi
X174 lysis protein-E. Journal of Biological Chemistry, 264 (8),
4552-4558. Retrieved from https://www.ncbi.nlm.nih.gov/pubmed/2466836
Chen, W., Chen, R., & Cao, J. (2021).
Rapid Genome Modification in Serratia marcescens Through Red Homologous
Recombination. Applied Biochemistry and Biotechnology .
doi:10.1007/s12010-021-03576-y
Chen, W., Li, Y., Wu, G., Zhao, L.,
Lu, L., Wang, P., . . . Li, S. (2019). Simple and efficient genome
recombineering using kil counter-selection in Escherichia coli.Journal of Biotechnology, 294 , 58-66.
Chen, Z., Ling, W., & Shang, G.
(2016). Recombineering and I-SceI-mediated Pseudomonas putida KT2440
scarless gene deletion. FEMS Microbiology Letters, 363 (21).
doi:10.1093/femsle/fnw231
DeVito, J. A. (2008). Recombineering
with tolC as a selectable/counter-selectable marker: remodeling the rRNA
operons of Escherichia coli. Nucleic Acids Research, 36 (1),
e4-e4.
Ellis, H. M., Yu, D., & DiTizio, T.
(2001). High efficiency mutagenesis, repair, and engineering of
chromosomal DNA using single-stranded oligonucleotides.Proceedings of the National Academy of Sciences, 98 (12),
6742-6746.
Emruzi, Z., Aminzadeh, S., Karkhane,
A. A., Alikhajeh, J., Haghbeen, K., & Gholami, D. (2018). Improving the
thermostability of Serratia marcescens B4A chitinase via G191V
site-directed mutagenesis. International Journal of Biological
Macromolecules, 116 , 64-70. doi:10.1016/j.ijbiomac.2018.05.014
Haeusser, D. P., Hoashi, M., Weaver,
A., Brown, N., Pan, J., Sawitzke, J. A., . . . Margolin, W. (2014). The
Kil peptide of bacteriophage λ blocks Escherichia coli cytokinesis via
ZipA-dependent inhibition of FtsZ assembly. PLoS Genetics, 10 (3),
e1004217.
Hajam, I. A., Dar, P. A., Won, G., &
Lee, J. H. (2017). Bacterial ghosts as adjuvants: mechanisms and
potential. Veterinary Research, 48 . doi:ARTN 37
10.1186/s13567-017-0442-5
Heap, J. T., Ehsaan, M., Cooksley, C.
M., Ng, Y.-K., Cartman, S. T., Winzer, K., & Minton, N. P. J. N. a. r.
(2012). Integration of DNA into bacterial chromosomes from plasmids
without a counter-selection marker. 40 (8), e59-e59.
Henrich, B., Lubitz, W., & Plapp, R.
(1982). Lysis of Escherichia coli by induction of cloned phi X174 genes.Molecular and General Genetics, 185 (3), 493-497.
doi:10.1007/BF00334146
Hutchison, C. A., 3rd, & Sinsheimer,
R. L. (1966). The process of infection with bacteriophage phi-X174. X.
Mutations in a phi-X Lysis gene. Journal of Molecular Biology,
18 (3), 429-447. doi:10.1016/s0022-2836(66)80035-9
Imam, A. A., Patrinos, G. P., de
Krom, M., Bottardi, S., Janssens, R. J., Katsantoni, E., . . . Grosveld,
F. G. (2000). Modification of human β-globin locus PAC clones by
homologous recombination in Escherichia coli. Nucleic Acids
Research, 28 (12), e65-e65.
Khetrapal, V., Mehershahi, K., Rafee,
S., Chen, S., Lim, C. L., & Chen, S. L. (2015). A set of powerful
negative selection systems for unmodified Enterobacteriaceae.Nucleic Acids Research, 43 (13), e83-e83.
Langemann, T., Koller, V. J.,
Muhammad, A., Kudela, P., Mayr, U. B., & Lubitz, W. (2010). The
Bacterial Ghost platform system: production and applications.Bioeng Bugs, 1 (5), 326-336. doi:10.4161/bbug.1.5.12540
Lee, E.-C., Yu, D., De Velasco, J.
M., Tessarollo, L., Swing, D. A., Court, D. L., . . . Copeland, N. G.
(2001). A highly efficient Escherichia coli-based chromosome engineering
system adapted for recombinogenic targeting and subcloning of BAC DNA.Genomics, 73 (1), 56-65.
Li, X.-t., Thomason, L. C., Sawitzke,
J. A., & Costantino, N. (2013). Positive and negative selection using
the tetA-sacB cassette: recombineering and P1 transduction in
Escherichia coli. Nucleic Acids Research, 41 (22), e204-e204.
Ma, W., Wang, X., Mao, Y., Wang, Z.,
Chen, T., & Zhao, X. (2015). Development of a markerless gene
replacement system in Corynebacterium glutamicum using upp as a
counter-selection marker. Biotechnology Letters, 37 (3), 609-617.
doi:10.1007/s10529-014-1718-8
Meyers, E. N., Lewandoski, M., &
Martin, G. R. (1998). An Fgf8 mutant allelic series generated by Cre-
and Flp-mediated recombination. Nature Genetics, 18 (2), 136-141.
doi:10.1038/ng0298-136
Mutalik, V. K., Guimaraes, J. C.,
Cambray, G., Lam, C., Christoffersen, M. J., Mai, Q. A., . . . Endy, D.
(2013). Precise and reliable gene expression via standard transcription
and translation initiation elements. Nature Methods, 10 (4),
354-360. doi:10.1038/nmeth.2404
Muyrers, J. P., Zhang, Y., Benes, V.,
Testa, G., Ansorge, W., & Stewart, A. F. (2000). Point mutation of
bacterial artificial chromosomes by ET recombination. EMBO
reports, 1 (3), 239-243.
Pan, X., Sun, C., Tang, M., You, J.,
Osire, T., Zhao, Y., . . . Rao, Z. (2019). LysR-Type Transcriptional
Regulator MetR Controls Prodigiosin Production, Methionine Biosynthesis,
Cell Motility, H2O2 Tolerance, Heat Tolerance, and Exopolysaccharide
Synthesis in Serratia marcescens. Applied and Environmental
Microbiology, 86 (4). doi:10.1128/AEM.02241-19
Reisch, C. R., & Prather, K. L.
(2015). The no-SCAR (Scarless Cas9 Assisted Recombineering) system for
genome editing in Escherichia coli. Scientific Reports, 5 , 15096.
doi:10.1038/srep15096
Van Zyl, W. F., Dicks, L. M., &
Deane, S. M. J. B. m. b. (2019). Development of a novel
selection/counter-selection system for chromosomal gene integrations and
deletions in lactic acid bacteria. 20 (1), 1-16.
Velez-Gomez, J. M., Melchor-Moncada,
J. J., Veloza, L. A., & Sepulveda-Arias, J. C. (2019). Corrigendum to
”Purification and characterization of a metalloprotease produced by the
C8 isolate of Serratia marcescens using silkworm pupae or casein as a
protein source” [Int. J. Biol. Macromol. 135 (2019) 97-105].International Journal of Biological Macromolecules, 138 , 1142.
doi:10.1016/j.ijbiomac.2019.07.142
Wang, H., Bian, X., Xia, L., Ding,
X., Müller, R., Zhang, Y., . . . Stewart, A. F. (2014). Improved
seamless mutagenesis by recombineering using ccdB for counterselection.Nucleic Acids Research, 42 (5), e37-e37.
Warming, S., Costantino, N., Court,
D. L., Jenkins, N. A., & Copeland, N. G. (2005). Simple and highly
efficient BAC recombineering using galK selection. Nucleic Acids
Research, 33 (4), e36. doi:10.1093/nar/gni035
Witte, A., & Lubitz, W. (1989).
Biochemical characterization of phi X174-protein-E-mediated lysis of
Escherichia coli. European Journal of Biochemistry, 180 (2),
393-398. doi:10.1111/j.1432-1033.1989.tb14661.x
Witte, A., Wanner, G., Sulzner, M.,
& Lubitz, W. (1992). Dynamics of PhiX174 protein E-mediated lysis of
Escherichia coli. Archives of Microbiology, 157 (4), 381-388.
doi:10.1007/BF00248685
Won, G., Hajam, I. A., & Lee, J. H.
(2017). Improved lysis efficiency and immunogenicity of Salmonella
ghosts mediated by co-expression of lambda phage holin-endolysin and
X174 gene E. Scientific Reports, 7 , 45139. doi:10.1038/srep45139
Wong, Q. N., Ng, V. C., Lin, M. C.,
Kung, H.-f., Chan, D., & Huang, J.-D. (2005). Efficient and seamless
DNA recombineering using a thymidylate synthase A selection system in
Escherichia coli. Nucleic Acids Research, 33 (6), e59-e59.
Yip, C.-H., Yarkoni, O., Ajioka, J.,
Wan, K.-L., Nathan, S. J. A. m., & biotechnology. (2019). Recent
advancements in high-level synthesis of the promising clinical drug,
prodigiosin. 103 (4), 1667-1680.
Young, K. D., & Young, R. (1982).
Lytic action of cloned phi X174 gene E. Journal of Virology,
44 (3), 993-1002. doi:10.1128/JVI.44.3.993-1002.1982
Yu, D., Ellis, H. M., Lee, E. C.,
Jenkins, N. A., Copeland, N. G., & Court, D. L. (2000). An efficient
recombination system for chromosome engineering in Escherichia coli.Proceedings of the National Academy of Sciences of the United
States of America, 97 (11), 5978-5983. doi:10.1073/pnas.100127597
Zhang, Y., Buchholz, F., Muyrers, J.
P., & Stewart, A. F. (1998). A new logic for DNA engineering using
recombination in Escherichia coli. Nature Genetics, 20 (2),
123-128.
Zhang, Y., Buchholz, F., Muyrers, J.
P., & Stewart, A. F. J. N. g. (1998). A new logic for DNA engineering
using recombination in Escherichia coli. 20 (2), 123-128.
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