Literature cited
Andrewartha, H.G., and Birch, L.C. 1954. The distribution and abundance
of animals. Chicago: University of Chicago Press. 782 p.
Amidon, W.H. Fisher, G.B., Burbank, D.W., Ciccioli, P.L., Alonso, R.N.,
Gorin, A.L.,
Silverhart, P.H., Kylander-Clark, A.R.C., and Christoffersen, M.S. 2017.
Mio-Pliocene aridity in the south-central Andes associated with Southern
Hemisphere cold periods. PNAS 114: 6474–6479
Antonelli, A., Zizka, A., Carvalho, F.A., Scharn, R., Bacon, C.B.,
Silvestro, D., and Condamine, F.L. 2018. Amazonia is the primary source
of Neotropical biodiversity. PNAS 115:6034-6039.
Behling, H., and Pillar, V.D. 2007. Late Quaternary vegetation,
biodiversity and fire dynamics on the southern Brazilian highland and
their implication for conservation and management of modern Araucaria
forest and grassland ecosystems. Philos. T. Roy. Soc. B. 362: 243-251.
Benton, M.J. 2010. The origins of modern biodiversity on land. Philos.
T. Roy. Soc. B. 365:3667–3679.
Bivand, R.S., Pebesma, E., Gomez-Rubio, V. 2013. Applied spatial data
analysis with R, Second edition. Springer, NY. https://asdar-book.org/
Bollback, J.P. 2006. SIMMAP: Stochastic character mapping of discrete
traits on
Phylogenies. BMC Bioinformatics 7:88.
Brown, J.H. 1984. On the relationship between abundance and distribution
of species. Am. Nat. 124:255–279.
Burnham, R.J., and Johnson, K.R. 2004. South American palaeobotany and
the origins of neotropical rainforests. Phil. Trans. R. Soc. Lond. B
359:1595–1610
Cadenasso, M.L., Pickett, S.T.A, Weathers, K.C., and Jones, C.G. 2003. A
Framework for a Theory of Ecological Boundaries. BioScience 53:750–758.
Cantalapiedra, J.L., FitzJohn, R.G., Kuhn, T.S., Hernández Fernández,
M., DeMiguel, D., Azanza, B., et al. 2014. Dietary innovations spurred
the diversification of ruminants during the Caenozoic. Philos. T. Roy.
Soc. B. 281:20132746.
Cantidio, L.S., and Souza, A.F. 2019. Aridity, soil and biome stability
influence plant ecoregions in the Atlantic Forest, a biodiversity
hotspot in South America. Ecography 42: 1887–1898.
Condamine, F.L., Rolland, J., and Morlon, H. 2019. Assessing the causes
of diversification slowdowns: temperature-dependent and
diversity-dependent models
receive equivalent support. Ecol. Lett. 22: 1900-1912.
Costa, G.C. Hampe, A., Ledru, M.-P., Martinez, P.A., Mazzochini, G.G..,
Shepard, D.B., Werneck, F.P. et al. 2017. Biome stability in South
America over the last 30 kyr: Inferences from long-term vegetation
dynamics and habitat modelling. Global Ecol. Biogeogr. 27:285-297.
Davies, T.J., and Buckley, L.B. 2011. Phylogenetic diversity as a window
into the evolutionary and biogeographic histories of present-day
richness gradients for mammals. Philos. T. Roy. Soc. B. 366:2414–2425.
de Vivo, M., and Carmignotto, A.P. 2004. Holocene vegetation change and
the mammal faunas of South America and Africa. J. Biogeog. 31:943–957.
D’Elía, G. and Pardiñas, U. F. J. 2015. Subfamily Sigmodontinae Wagner,
1843. – In: Patton, J. L. et al. (eds), Mammals of South America, vol.
2: rodents. Univ. of Chicago Press, pp. 63–70.
Donoghue, M.J., and Edwards, E.J. 2014. Biome shifts and niche evolution
in plants. Annu. Rev. Ecol. Evol. Syst. 45:547–572.
Dynnerius, M., and Jansson, R. 2000. Evolutionary consequences of
changes in species’
geographical distributions driven by Milankovitch climate oscillations.
PNAS 97:9115–9120.
Eckert, C. G., Samis, K.E., and Lougheed, S.C. 2008. Genetic variation
across species’ geographical ranges: the central–marginal hypothesis
and beyond. Mol. Ecol. 17:1170–1188.
Gingerich, P.D. 2009. Rates of Evolution. Annu. Rev. Ecol. Evol. Syst.
40:657–675.
Goldberg, E.E., Roy, K., Lande, R., and Jablonski, D. 2005. Diversity,
endemism, and age distributions in macroevolutionary sources and sinks.
Am. Nat. 165:623-633.
Hijmans, R.J. 2019. geosphere: Spherical Trigonometry. R package version
1.5-10. https://CRAN.R-project.org/package=geosphere
Hijmans, R.J. 2020. Raster: Geographic Data Analysis and Modeling. R
package version 3.1-5. https://CRAN.R-project.org/package=raster
Jetz, W., Thomas, G. H., Joy, J. B., Hartmann, K., and Mooers, A. O.
2012. The global diversity of birds in space and time. Nature
491:444-448.
Joy, J.B., Liang, R.H., McCloskey, M., Nguyen, T., and Poon, A.F.Y.
2016. Ancestral reconstruction. Plos Comput. Biol. 12:e1004763.
Karanth, K.K., Nichols, J.D., Sauer, J.R., and Hines, J.E. 2006.
Comparative dynamics of avian communities across edges and interiors of
North American ecoregions. J. Biogeog. 33:674-682.
Leite, R.N., Kolokotronis, S.-O., Almeida, F.C., Werneck, F.P., Rogers,
D.S., and Weksler, M. 2014. In the wake of invasion: tracing the
historical biogeography of the South American cricetid radiation
(Rodentia, Sigmodontinae). PLoS ONE 9:e100687.
Löwenberg-Neto P 2015. Andean region: a shapefile of Morrone’s (2015)
biogeographical regionalisation. Zootaxa 3985:600.
Machado, L.F., Leite, Y.L., Christoff, A.U., and Giugliano, L.G. 2013.
Phylogeny and biogeography of tetralophodont rodents of the tribe
Oryzomyini (Cricetidae: Sigmodontinae). Zool. Scr. 43: 119-130.
Maestri, R., and Patterson, B.D. 2016. Patterns of species richness and
turnover for the south american rodent fauna. PLoS ONE 11: e0151895.
Maestri, R., Monteiro, L.R., Fornel, R., Upham, N.S., Patterson, B.D.,
and Freitas, T.R.O. 2017. The ecology of a continental evolutionary
radiation: Is the radiation of sigmodontine rodents adaptive? Evolution
71-3:610–632.
Maestri, R., Upham, N.S., and Patterson, B.D. 2019. Tracing the
diversification history of a Neogene rodent invasion into South America.
Ecography 42:683-695.
Maestri, R., and Duarte, L. 2020. Evoregions: Mapping shifts in
phylogenetic turnover across biogeographic regions. Methods Ecol. Evol.
11: 1652-1662.
Musser, G.G., and Carleton, M.D. 2005. Superfamily Muroidea. Pages
894-1531 in Wilson, D.E., and Reeder, D.M., eds., Mammal Species
of the World: A Taxonomic and Geographic Reference, The Johns Hopkins
University Press, Baltimore.
Mayle, F.E., and Power, M.J. 2008. Impact of a drier Early–Mid-Holocene
climate upon Amazonian forests. Philos. T. Roy. Soc. B. 363:1829–1838.
Mayle, F.E., Beerling, D.J., Gosling, W.D., and Bush, M.B. 2004.
Responses of Amazonian ecosystems to climatic and atmospheric carbon
dioxide changes since the last glacial maximum. Philos. T. Roy. Soc. B.
359:499–514.
McGill, B.J., Chase, J.M., Hórtal, J., Overcast, I., Rominger, A.J.,
Rosindell, J., Borges, P.A.V., et al. 2019. Unifying macroecology and
macroevolution to answer fundamental questions about biodiversity.
Global Ecol. Biogeogr. 28: 1925-1936.
Missagia, R.V., Patterson, B.D., and Perini, F.A. 2019. Stable isotope
signatures and the trophic diversification of akodontine rodents. Evol.
Ecol. 33:855-872.
Muylaert, R.L., Vancine, M.H., Bernardo, R., Oshima, J.E.F.,
Sobral-Souza, T., Tonetti, V.R., Niebuhr, B.B., and Ribeiro, M.C. 2018.
Uma nota sobre os limites territoriais da Mata Atlântica. Oecol. Aust.
22:302–311.
Oliveira, B., Machac, A., Costa, G.C., Brooks, T.M., Davidson, A.D.,
Rondinini, C. and
Graham, C.H. 2016. Species and functional diversity accumulate
differently in mammals. Global Ecol. Biogeog. 25:1119–1130.
Olson, D.M., Dinerstein, E., Wikramanayake, E.D., Burgess, N.D., Powell,
G.V.N., Underwood, E.C., D’Amico, J.A., et al. 2001. Terrestrial
ecoregions of the world: A new map of life on Earth. BioScience
51:933–938.
Paglia, A.P., Fonseca, G.A.B.d., Rylands, A.B.; Herrmann, G., Aguiar,
L.M.S., Chiarello, A.G., Leite, Y.L.R., et al. 2012. Annotated checklist
of Brazilian mammals. 2. ed. Arlington, Conservation International.
Pardiñas U.F.J., Cañón, C., Galliari, C.A., Brito, J., Hoverud, N.B.,
Lessa, G., and Oliveira, J.A. 2020. Gross stomach morphology in
akodontine rodents (Cricetidae: Sigmodontinae: Akodontini): a
reappraisal of its significance in a phylogenetic context. J. Mammal.
101:835-857.
Patton, J.L., Pardiñas, U.F.J., D’Elía, G. (eds.) 2015. Mammals of South
America, Volume 2: Rodents. University of Chicago Press. 1336 pp.
Pearman, P.B., Guisan, A., Broennimann, O., and Randin, C.F. (2008).
Niche dynamics in space and time. Trends Ecol. Evol. 23:149-158.
Pinheiro, J.C., and Bates, D.M. 2000. Mixed-Effect Models in S and
S-plus. Springer, New York- US. 528 p.
Pinheiro J, Bates D, DebRoy S, Sarkar D, R Core Team (2020). nlme:
Linear and Nonlinear Mixed Effects Models. R package version 3.1-148,
URL: https://CRAN.R-project.org/package=nlme.
Price, S.A., Hopkins, S.S.B., Smith, K.K., Roth, V.L. 2012. Tempo of
trophic evolution and its impact on mammalian diversification. PNAS 109:
7008-7012.
R Core Team. 2020. R: A language and environment for statistical
computing. R Foundation for Statistical Computing, Vienna, Austria. URL
https://www.R-project.org/.
Range, T.F., Colwell, R.K., Graves, G.R., Fuciková, K., Rahbek, C., and
Diniz-Filho, J.A. 2015. Phylogenetic uncertainty revisited: Implications
for ecological analyses. Evolution 69: 1301-1312.
Revell, L.J. 2012. Phytools: an R package for phylogenetic comparative
biology (and other things). Methods Ecol. Evol. 3:217-223.
Schielzeth, H. 2010. Simple means to improve the interpretability of
regression coefficients. Methods Ecol. Evol. 1:103-113.
Sandel, B., Arge, L., Dalsgaard, B., Davies, R.G., Gaston, K.J.,
Sutherland, W.J., and Svenning, J.-C. 2011. The influence of late
quaternary climate-change velocity on species endemism. Science
334:660-664.
Sexton, J.P., McIntyre, P.J., Angert, A.L., and Rice, K.J. 2009.
Evolution and Ecology of Species Range Limits. Annu. Rev. Ecol. Evol.
Syst. 40:415–436.
Smith, J.R., Letten, A.D., Ke, P-J., Anderson, C.B., Hendershot, J.N.,
Dhami, M.K. Dlott, G.A., et al. 2018. A global test of ecoregions. Nat.
Ecol. Evol. 2:1889–1896.
Stekhoven D.J., and Buehlmann, P. 2012. Package MissForest -
nonparametric missing value imputation for mixed-type data.
Bioinformatics 28:112-118.
Steppan S.J., and Schenk J.J. 2017. Muroid rodent phylogenetics:
900-species tree reveals increasing diversification rates. PLoS ONE 12:
e0183070.
Title, P.O., and Rabosky, D.L. 2018. Tip rates, phylogenies and
diversification: What are we estimating, and how good are the estimates?
Methods Ecol. Evol. 10:821-834.
Upham N.S., Esselstyn J.A., and Jetz W. 2019. Inferring the mammal tree:
Species-level sets of phylogenies for questions in ecology, evolution,
and conservation. PLOS Biol. 17:e3000494.
Weksler, M. 2006. Phylogenetic relationships of Oryzomine rodents
(Muroidea:
Sigmodontinae): separate and combined analyses of morphological and
molecular data. B. Am. Mus. Nat. Hist. 296: 1:149.
Wiens, J.J., and Donoghue, M.J. 2004. Historical biogeography, ecology
and species richness. Trends Ecol. Evol. 19:639-644.
Wiens, J.J., and Graham, C.H. 2005. Niche conservatism: integrating
evolution, ecology, and conservation biology. Annu. Rev. Ecol. Evol.
Syst. 36:519-539.
Wilman, H., Belmaker, J., Simpson, J., Rosa C.d.l., Rivadeneira, M.M.,
and Jetz, W. 2014. EltonTraits 1.0: Species-level foraging attributes of
the world’s birds and mammals. Ecology 95:2027.