2.7 | Data analysis
The phylogenetic analyses of DMC 1 and rps 16 data by using
the maximum-likelihood (ML) method in PhyML 3.0 (Guindon et al., 2009).
The best-fit evolutionary model for phylogenetic analysis was determined
using ModelTest v3.7 with Akaike information criterion (Posada &
Crandall, 1998). As a measurement of the robustness of tree clades, the
bootstrap support (BS) values were calculated with 1000 replications and
displayed in figure (above the branch) if the BS values were
>50% (Felsenstein, 1985).
In addition to ML analysis, Bayesian analyses were also performed using
MrBayes 3.1 (Ronquist & Huelsenbeck, 2003). The evolutionary model
selected for Bayesian analyses was same as ML analysis.