10. Consider limitations of the model
It is important to bear in mind that models are predictions and therefore have their limitations. This has to be considered in interpretation and explanation of e.g. in structure-based biological and medical phenomena. Describe any limitations of the generated model and limitations in the interpretation and inference based on it.
Example: The model is considered to be rather reliable, as indicated by validation scores. Since the template matches along with the entire sequence and has 53% sequence identity, the scaffolding and conserved parts are likely of high quality. The orientation of loop at position 216-220 is somewhat unsure. This region has relatively high B factor values in the template (>60 Å2) and the additional residues on the surface loop have plenty of degrees of freedom. The structure was minimized to solve clashes and non-favorable stereochemistry.