3.2 Pool-seq data and population genomics
In total, 213 giga base pairs (Gb; 1,527 million reads) and 197 Gb
(1,302 million reads) of raw Pool-seq data were generated for the
samples from Deme I and II, respectively. After quality filtering of raw
reads and mapping, 184 and 134 Gb of data, corresponding to 1,366 and
1,169 million reads mapped as pairs, remained (Table S1). Read depth was
larger in data from Deme I than from Deme II (mode of read depth=104 vs.
90). The average mapping quality (c. 33) and edit distance between the
reads and reference (ca 0.6%) were similar in data from both pools
(Table S1).