Reference
An, Z.S., Zhang, P.Z., Wang, E.Q., Wang, S.M., Qiang, X.K., Li, L., … Ai, L. (2006). Changes of the monsoon‐arid environment in China and growth of the Tibetan Plateau since the Miocene. Quaternary Sciences , 26, 678–693. (in Chinese).
Benton, M.J. (2009). The Red Queen and the Court Jester: species diversity and the role of biotic and abiotic factors through time. Science , 323, 728–732. https://doi.org/10.1126/science.1157719.
Dahal, N., Lissovsky, A.A., Lin, Z., Solari, K., Hadly, E.A., Zhan, X., & Ramakrishnan, U. (2017). Genetics, morphology and ecology reveal a cryptic pika lineage in the Sikkim Himalaya. Molecular Phylogenetics and Evolution , 106, 55–60.https://doi.org/10.1016/j.ympev.2016.09.015.
de Meeûs, T., Michalakis, Y., & Renaud, F. (1998). Santa rosalia revisited: or why are there so many kinds of parasites in; the garden of earthly delights’?.Parasitology Today (Personal ed.) , 14, 10–13.https://doi.org/10.1016/s0169-4758(97)01163-0.
Deplazes, P., Eichenberger, R.M., & Grimm, F. (2019). Wildlife-transmitted Taenia and Versteria cysticercosis and coenurosis in humans and other primates. International Journal for Parasitology. Parasites and Wildlife , 9, 342–358.https://doi.org/10.1016/j.ijppaw.2019.03.013.
Flisser, A., Correa, D., Avilla, G., & Marvilla, P. (2005). Biology of Taenia solium ,Taenia saginata and Taenia saginata asiatica . In: Murrell, K.D. Paris (Ed.), WHO/FAO/OIE Guidelines for the Surveillance, Prevention and Control of Taeniosis/Cysticercosis. OIE Press , pp, 14–22.
Hajibabaei, M., Singer, G.A., Hebert, P.D., & Hickey, D.A. (2007). DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics. Trends in Genetics: TIG , 23, 167–172.https://doi.org/10.1016/j.tig.2007.02.001.
Hallal-Calleros, C., Morales-Montor, J., Orihuela-Trujillo, A., Togno-Peirce, C., Murcia-Mejía, C., Bielli, A., … Flores-Pérez, F.I. (2016).Taenia pisiformis cysticercosis induces decreased prolificacy and increased progesterone levels in rabbits. Veterinary Parasitology , 229, 50–53.https://doi.org/10.1016/j.vetpar.2016.09.015.
Hebert, P.D., & Gregory, T.R. (2005). The promise of DNA barcoding for taxonomy. Systematic Biology , 54, 852–859.https://doi.org/10.1080/10635150500354886.
Hoberg, E. P., Jones, A., Rausch, R. L., Eom, K. S., & Gardner, S. L. (2000). A phylogenetic hypothesis for species of the genus Taenia(Eucestoda : Taeniidae). The Journal of Parasitology , 86, 89–98. https://doi.org/10.1645/0022-3395(2000)086[0089:APHFSO]2.0.CO;2.
Hoberg E. P. (2006). Phylogeny of Taenia : Species definitions and origins of human parasites. Parasitology International , 55, S23–S30. https://doi.org/10.1016/j.parint.2005.11.049.
Huyse, T., Poulin, R., & Théron, A. (2005). Speciation in parasites: a population genetics approach.Trends in Parasitology , 21, 469–475.https://doi.org/10.1016/j.pt.2005.08.009.
International Helminth Genomes Consortium. (2019). Comparative genomics of the major parasitic worms. Nature Genetics , 51, 163–174.https://doi.org/10.1038/s41588-018-0262-1.
Jeon, H.K., Kim, K.H., & Eom, K.S. (2007). Complete sequence of the mitochondrial genome of Taenia saginata : comparison with T. solium and T. asiatica . Parasitology International , 56, 243–246.https://doi.org/10.1016/j.parint.2007.04.001.
Jeon, H.K., Lee, K.H., Kim, K.H., Hwang, U.W., & Eom, K.S. (2005). Complete sequence and structure of the mitochondrial genome of the human tapeworm, Taenia asiatica (Platyhelminthes; Cestoda).Parasitology , 130, 717–726.https://doi.org/10.1017/s0031182004007164.
Jia, W.Z., Yan, H.B., Guo, A.J., Zhu, X.Q., Wang, Y.C., Shi, W.G., … Cai, X.P. (2010). Complete mitochondrial genomes ofTaenia multiceps , T. hydatigena and T. pisiformis : additional molecular markers for a tapeworm genus of human and animal health significance. BMC Genomics , 11, 447.https://doi.org/10.1186/1471-2164-11-447.
Jia, W., Yan, H., Lou, Z., Ni, X., Dyachenko, V., Li, H., & Littlewood, D.T. (2012). Mitochondrial genes and genomes support a cryptic species of tapeworm within Taenia taeniaeformis . Acta Tropica , 123, 154–163. https://doi.org/10.1016/j.actatropica.2012.04.006.
Kinkar, L., Laurimäe, T., Acosta-Jamett, G., Andresiuk, V., Balkaya, I., Casulli, A., … Saarma, U. (2018). Global phylogeography and genetic diversity of the zoonotic tapeworm Echinococcus granulosus sensu stricto genotype G1. International Journal for Parasitology , 48, 729–742.https://doi.org/10.1016/j.ijpara.2018.03.006.
Laslett, D., & Canbäck, B. (2008). ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences. Bioinformatics (Oxford, England) , 24, 172–175.https://doi.org/10.1093/bioinformatics/btm573 .
Lavikainen, A., Haukisalmi, V., Deksne, G., Holmala, K., Lejeune, M., Isomursu, M., … Sukura, A. (2013). Molecular identification ofTaenia spp. in the Eurasian lynx (Lynx lynx ) from Finland.Parasitology , 140, 653–662.https://doi.org/10.1017/S0031182012002120.
Lavikainen, A., Laaksonen, S., Beckmen, K., Oksanen, A., Isomursu, M., & Meri, S. (2011). Molecular identification of Taenia spp. in wolves (Canis lupus ), brown bears (Ursus arctos ) and cervids from North Europe and Alaska. Parasitology International , 60, 289–295.https://doi.org/10.1016/j.parint.2011.04.004.
Le, T.H., Blair, D., Agatsuma, T., Humair, P.F., Campbell, N.J., Iwagami, M., … McManus, D.P. (2000). Phylogenies inferred from mitochondrial gene orders-a cautionary tale from the parasitic flatworms. Molecular Biology and Evolution , 17, 1123–1125.https://doi.org/10.1093/oxfordjournals.molbev.a026393.
Li, D.P., Zhao, Y., Hu, J.M., Wan, J.L., Li, X.L., Zhou, X.K., … Pei, J.L. (2007). Fission track thermochronologic constraints on plateau surface and geomorphic relief formation in the northwestern margin of the Tibetan Plateau. Acta Petrologica Sinica , 23, 900–910. (in Chinese)
Li, J.Q., Li, L., Fu, B.Q., Yan, H.B., & Jia, W.Z. (2019). Complete mitochondrial genomes confirm the generic placement of the plateau vole,Neodon fuscus . Bioscience Reports , 39, BSR20182349.https://doi.org/10.1042/BSR20182349.
Li, W., Guo, Z., Duo, H., Fu, Y., Peng, M., Shen, X., … Nonaka, N. (2013). Survey on helminths in the small intestine of wild foxes in Qinghai, China. The Journal of Veterinary Medical Science , 75, 1329–1333.https://doi.org/10.1292/jvms.13-0187.
Liu, G.H., Lin, R.Q., Li, M.W., Liu, W., Liu, Y., Yuan, Z.G., … Zhu, X.Q. (2011). The complete mitochondrial genomes of three cestode species of Taenia infecting animals and humans. Molecular Biology Reports , 38, 2249–2256.https://doi.org/10.1007/s11033-010-0355-0.
Lymbery A.J. (1998). Combining data from morphological traits and genetic markers to determine transmission cycles in the tape worm,Echinococcus granulosus . Parasitology , 117, 185–192.https://doi.org/10.1017/s0031182098002911.
Lymbery, A.J. (2017). Phylogenetic Pattern, Evolutionary Processes and Species Delimitation in the Genus Echinococcus . Advances in Parasitology , 95, 111–145.https://doi.org/10.1016/bs.apar.2016.07.002.
Mathis, A., & Deplazes, P. (2006). Copro-DNA tests for diagnosis of animal taeniid cestodes. Parasitology International , 55, S87–S90.https://doi.org/10.1016/j.parint.2005.11.012.
Michelet, L., & Dauga, C. (2012). Molecular evidence of host influences on the evolution and spread of human tapeworms. Biological Reviews of the Cambridge Philosophical Society , 87, 731–741.https://doi.org/10.1111/j.1469-185X.2012.00217.x.
Nakao, M., Lavikainen, A., Iwaki, T., Haukisalmi, V., Konyaev, S., Oku, Y., … Ito, A. (2013). Molecular phylogeny of the genusTaenia (Cestoda: Taeniidae): proposals for the resurrection ofHydatigera Lamarck, 1816 and the creation of a new genusVersteria . International Journal for Parasitology , 43, 427–437.https://doi.org/10.1016/j.ijpara.2012.11.014.
Nakao, M., McManus, D.P., Schantz, P.M., Craig, P.S., & Ito, A. (2007). A molecular phylogeny of the genus Echinococcus inferred from complete mitochondrial genomes. Parasitology , 134, 713–722.https://doi.org/10.1017/S0031182006001934.
Nakao, M., Sako, Y., Yokoyama, N., Fukunaga, M., & Ito, A. (2000). Mitochondrial genetic code in cestodes.Molecular and Biochemical Parasitology , 111, 415–424.https://doi.org/10.1016/s0166-6851(00)00334-0 .
Okimoto, R., Macfarlane, J.L., & Wolstenholme, D.R. (1990). Evidence for the frequent use of TTG as the translation initiation codon of mitochondrial protein genes in the nematodes, Ascaris suum and Caenorhabditis elegans .Nucleic Acids Research , 18, 6113–6118.https://doi.org/10.1093/nar/18.20.6113.
Paul, R. (2002). Species concepts versus species criteria. Trends in Parasitology , 18, 439–440.https://doi.org/10.1016/s1471-4922(02)02319-x.
Posada, D., & Crandall, K.A. (1998). MODELTEST: testing the model of DNA substitution. Bioinformatics (Oxford, England) , 14, 817–818.https://doi.org/10.1093/bioinformatics/14.9.817 .
Pradhan, N., Sharma, A.N., Sherchan, A.M., Chhetri, S., Shrestha, P., & Kilpatrick, C.W. (2019). Further assessment of the Genus Neodon and the description of a new species from Nepal. PLoS One , 14, e0219157.https://doi.org/10.1371/journal.pone.0219157.
Rota-Stabelli, O., Yang, Z., & Telford, M.J. (2009). MtZoa: A general mitochondrial amino acid substitutions model for animal evolutionary studies. Molecular Phylogenetics and Evolution , 52, 268–272.https://doi.org/10.1016/j.ympev.2009.01.011.
Shi, Z.G., Liu, X.D., & Sha, Y.Y. (2015). Did northern Tibetan Plateau uplift during Pliocene? A modeling test. Journal of Earth Environment , 6, 67–80. (in Chinese)
Singla, L.D., Singla, N., Parshad, V.R., Juyal, P.D., & Sood, N.K. (2008). Rodents as reservoirs of parasites in India. Integrative Zoology , 3, 21–26.https://doi.org/10.1111/j.1749-4877.2008.00071.x.
Smith, A.T., Badingqiuying, Wilson, M.C., & Hogan, B.W. (2019). Functional-trait ecology of the plateau pika Ochotona curzoniae in the Qinghai-Tibetan Plateau ecosystem. Integrative Zoology , 14, 87–103.https://doi.org/10.1111/1749-4877.12300.
Suzán, G., Marcé, E., Giermakowski, J.T., Armién, B., Pascale, J., Mills, J., … Yates, T. (2008). The effect of habitat fragmentation and species diversity loss on hantavirus prevalence in Panama. Annals of the New York Academy of Sciences , 1149, 80–83.https://doi.org/10.1196/annals.1428.063.
Telford, M.J., Herniou, E.A., Russell, R.B., & Littlewood, D.T. (2000). Changes in mitochondrial genetic codes as phylogenetic characters: two examples from the flatworms. Proceedings of the National Academy of Sciences of the United States of America , 97, 11359–11364.https://doi.org/10.1073/pnas.97.21.11359 .
Terefe, Y., Hailemariam, Z., Menkir, S., Nakao, M., Lavikainen, A., Haukisalmi, V., … Ito, A. (2014). Phylogenetic characterisation of Taenia tapeworms in spotted hyenas and reconsideration of the ”Out of Africa” hypothesis ofTaenia in humans. International Journal for Parasitology , 44, 533–541.https://doi.org/10.1016/j.ijpara.2014.03.013.
Turelli, M., Barton, N.H., & Coyne, J.A. (2001). Theory and speciation.Trends in Ecology & Evolution , 16, 330–343.https://doi.org/10.1016/s0169-5347(01)02177-2 .
Valdmann, H., Moks, E., & Talvik, H. (2004). Helminth fauna of Eurasian lynx (Lynx lynx ) in Estonia. Journal of Wildlife Diseases , 40, 356–360.https://doi.org/10.7589/0090-3558-40.2.356.
Wang, S., Wang, S., Luo, Y., Xiao, L., Luo, X., Gao, S., … Cai, X. (2016). Comparative genomics reveals adaptive evolution of Asian tapeworm in switching to a new intermediate host. Nature Communications , 7, 12845.https://doi.org/10.1038/ncomms12845.
Wang, X., Liang, D., Jin, W., Tang, M., Liu, S., & Zhang, P. (2020). Out of Tibet: Genomic Perspectives on the Evolutionary History of Extant Pikas. Molecular Biology and Evolution , 37, 1577–1592.https://doi.org/10.1093/molbev/msaa026.
Wang, X., Liu, J., Zuo, Q., Mu, Z., Weng, X., Sun, X., … Wang, Z. (2018). Echinococcus multilocularis and Echinococcus shiquicus in a small mammal community on the eastern Tibetan Plateau: host species composition, molecular prevalence, and epidemiological implications. Parasites & Vectors , 11, 302.https://doi.org/10.1186/s13071-018-2873-x .
Will, K.W., Mishler, B.D., & Wheeler, Q.D. (2005). The perils of DNA barcoding and the need for integrative taxonomy. Systematic Biology , 54, 844–851.https://doi.org/10.1080/10635150500354878 .
Wu, Z., Lu, L., Du, J., Yang, L., Ren, X., Liu, B., … Jin, Q. (2018). Comparative analysis of rodent and small mammal viromes to better understand the wildlife origin of emerging infectious diseases.Microbiome , 6, 178.https://doi.org/10.1186/s40168-018-0554-9.
Xiao, N., Qiu, J., Nakao, M., Li, T., Yang, W., Chen, X., … Ito, A. (2005). Echinococcus shiquicus n. sp., a taeniid cestode from Tibetan fox and plateau pika in China. International Journal for Parasitology , 35, 693–701.https://doi.org/10.1016/j.ijpara.2005.01.003.
Zhou, L., & Ma, Y. (2002). Distribution patterns of rodent diversity in arid regions of West China. Biodiversity Science. Chinese Biodiversity , 10, 44–48. (in Chinese)
Table 1. Positions and gene lengths in the mitochondrial genomes ofTaenia tianguangfui larva (Tt), T. caixuepengi larva (Tc)