Fig
6. Centered-log ratio (CLR) abundance of pathway classes of particular
interest between metagenomics (Humann2) and
hidden-state prediction (HSP) methods (Paprica and
Picrust2).
Classes of pathways with positive CLR were more prevalent at the pens
while those with negative CLR were more prevalent at the reference
sites.
Table 1 . Permutational analysis of variance of the taxonomic
(amplicon sequence variant; ASVs) and functional communities between
distance categories (pen versus reference sites) per methodology using
999 permutations. Significant responses (p.value ≤ 0.05) are displayed
in bold.