References
Akane, A., Seki, S., Shiono, H., Nakamura, H., Hasegawa, M., Kagawa, M., Matsubara, K., Nakahori, Y., Nagafuchi, S., & Nakagome, Y. (1992). Sex determination of forensic samples by dual PCR amplification of an X-Y homologous gene. Forensic Science International , 52 (2), 143–148. https://doi.org/10.1016/0379-0738(92)90102-3
Bover, P., Llamas, B., Thomson, V. A., Pons, J., Cooper, A., & Mitchell, K. J. (2018). Molecular resolution to a morphological controversy: The case of North American fossil muskoxen Bootherium and Symbos. Molecular Phylogenetics and Evolution , 129 , 70–76. https://doi.org/10.1016/j.ympev.2018.08.008
Clapcote, S. J., & Roder, J. C. (2005). Simplex PCR assay for sex determination in mice. BioTechniques , 38 (5), 702–706. https://doi.org/10.2144/05385BM05
Cummins, D., Kennington, W. J., Rudin‐Bitterli, T., & Mitchell, N. J. (2019). A genome‐wide search for local adaptation in a terrestrial‐breeding frog reveals vulnerability to climate change.Global Change Biology , 25 (9), 3151–3162. https://doi.org/10.1111/gcb.14703
Ewart, K. M., Johnson, R. N., Ogden, R., Joseph, L., Frankham, G. J., & Lo, N. (2019). Museum specimens provide reliable SNP data for population genomic analysis of a widely distributed but threatened cockatoo species. Molecular Ecology Resources , 19 (6), 1578–1592. https://doi.org/10.1111/1755-0998.13082
Flamingh, A. de, Coutu, A., Roca, A. L., & Malhi, R. S. (2020). Accurate Sex Identification of Ancient Elephant and Other Animal Remains Using Low-Coverage DNA Shotgun Sequencing Data. G3: Genes, Genomes, Genetics , 10 (4), 1427–1432. https://doi.org/10.1534/g3.119.400833
Fowler, B. L. S., & Buonaccorsi, V. P. (2016). Genomic characterization of sex-identification markers in Sebastes carnatus and Sebastes chrysomelas rockfishes. Molecular Ecology , 25 (10), 2165–2175. https://doi.org/10.1111/mec.13594
Gamble, T. (2016). Using RAD-seq to recognize sex-specific markers and sex chromosome systems. Molecular Ecology , 25 (10), 2114–2116. https://doi.org/10.1111/mec.13648
Gower, G. (2019). Inferring the Charactersitics of Ancient Populations using Bioinformatic Analysis of Genome-wide DNA Sequencing Data [Doctoral Dissertation]. University of Adelaide.
Gower, G., Fenderson, L. E., Salis, A. T., Helgen, K. M., van Loenen, A. L., Heiniger, H., Hofman-Kamińska, E., Kowalczyk, R., Mitchell, K. J., Llamas, B., & Cooper, A. (2019). Widespread male sex bias in mammal fossil and museum collections. Proceedings of the National Academy of Sciences , 116 (38), 19019–19024. https://doi.org/10.1073/pnas.1903275116
Hoffmann, A., Decher, J., Rovero, F., Schaer, J., Voigt, C., & Wibbelt, G. (2010). Field Methods and Techniques for Monitoring Mammals.Manual on Field Recording Techniques and Protocols for All Taxa Biodiversity Inventories , 8 , 482–529.
Hrovatin, K., & Kunej, T. (2017). Genetic sex determination assays in 53 mammalian species: Literature analysis and guidelines for reporting standardization. Ecology and Evolution , 8 (2), 1009–1018. https://doi.org/10.1002/ece3.3707
Jacques, M.-E., McBee, K., & Elmore, D. (2015). Determining Sex and Reproductive Status of Rodents . 4.
Kilian, A., Wenzl, P., Huttner, E., Carling, J., Xia, L., Blois, H., Caig, V., Heller-Uszynska, K., Jaccoud, D., Hopper, C., Aschenbrenner-Kilian, M., Evers, M., Peng, K., Cayla, C., Hok, P., & Uszynski, G. (2012). Diversity Arrays Technology: A Generic Genome Profiling Technology on Open Platforms. In F. Pompanon & A. Bonin (Eds.), Data Production and Analysis in Population Genomics: Methods and Protocols (pp. 67–89). Humana Press. https://doi.org/10.1007/978-1-61779-870-2_5
Labov, J. B., William Huck, U., Vaswani, P., & Lisk, R. D. (1986). Sex ratio manipulation and decreased growth of male offspring of undernourished golden hamsters (Mesocricetus auratus). Behavioral Ecology and Sociobiology , 18 (4), 241–249. https://doi.org/10.1007/BF00300000
Lambert, M. R., Skelly, D. K., & Ezaz, T. (2016). Sex-linked markers in the North American green frog (Rana clamitans) developed using DArTseq provide early insight into sex chromosome evolution. BMC Genomics , 17 (1), 844. https://doi.org/10.1186/s12864-016-3209-x
McFarlane, L., Truong, V., Palmer, J. S., & Wilhelm, D. (2013). Novel PCR Assay for Determining the Genetic Sex of Mice. Sexual Development , 7 (4), 207–211. https://doi.org/10.1159/000348677
Motahari, A. S., Bresler, G., & Tse, D. N. C. (2013). Information Theory of DNA Shotgun Sequencing. IEEE Transactions on Information Theory , 59 (10), 6273–6289. https://doi.org/10.1109/TIT.2013.2270273
Pazmiño, D. A., Maes, G. E., Green, M. E., Simpfendorfer, C. A., Hoyos-Padilla, E. M., Duffy, C. J. A., Meyer, C. G., Kerwath, S. E., Salinas-de-León, P., & van Herwerden, L. (2018). Strong trans-Pacific break and local conservation units in the Galapagos shark ( Carcharhinus galapagensis ) revealed by genome-wide cytonuclear markers.Heredity , 120 (5), 407–421. https://doi.org/10.1038/s41437-017-0025-2
Pečnerová, P., Díez-del-Molino, D., Dussex, N., Feuerborn, T., von Seth, J., van der Plicht, J., Nikolskiy, P., Tikhonov, A., Vartanyan, S., & Dalén, L. (2017). Genome-Based Sexing Provides Clues about Behavior and Social Structure in the Woolly Mammoth. Current Biology ,27 (22), 3505-3510.e3. https://doi.org/10.1016/j.cub.2017.09.064
Rosenfeld, C. S., Grimm, K. M., Livingston, K. A., Brokman, A. M., Lamberson, W. E., & Roberts, R. M. (2003). Striking variation in the sex ratio of pups born to mice according to whether maternal diet is high in fat or carbohydrate. Proceedings of the National Academy of Sciences , 100 (8), 4628–4632. https://doi.org/10.1073/pnas.0330808100
Sansaloni, C., Petroli, C., Jaccoud, D., Carling, J., Detering, F., Grattapaglia, D., & Kilian, A. (2011). Diversity Arrays Technology (DArT) and next-generation sequencing combined: Genome-wide, high throughput, highly informative genotyping for molecular breeding of Eucalyptus. BMC Proceedings , 5 (S7), P54, 1753-6561-5-S7-P54. https://doi.org/10.1186/1753-6561-5-S7-P54
Schultz, A. J., Cristescu, R. H., Littleford‐Colquhoun, B. L., Jaccoud, D., & Frère, C. H. (2018). Fresh is best: Accurate SNP genotyping from koala scats. Ecology and Evolution , 8 (6), 3139–3151. https://doi.org/10.1002/ece3.3765
Skoglund, P., Storå, J., Götherström, A., & Jakobsson, M. (2013). Accurate sex identification of ancient human remains using DNA shotgun sequencing. Journal of Archaeological Science , 40 (12), 4477–4482. https://doi.org/10.1016/j.jas.2013.07.004
Steppan, S. J., & Schenk, J. J. (2017). Muroid rodent phylogenetics: 900-species tree reveals increasing diversification rates. PLOS ONE , 12 (8), e0183070. https://doi.org/10.1371/journal.pone.0183070
van Deventer, R., Rhode, C., Marx, M., & Roodt-Wilding, R. (2020). The development of genome-wide single nucleotide polymorphisms in blue wildebeest using the DArTseq platform. Genomics , 112 (5), 3455–3464. https://doi.org/10.1016/j.ygeno.2020.04.032
Data Accessibility Statement (to be archived upon acceptance)
The reads generated for this study have been deposited at the Sequence Read Archive (NCBI) with project number TBA