Figure captions
Fig. 1 The origin of Tembusu virus (TMUV) was deduced using the complete
ORF gene. a) Maximum likelihood tree reconstructed with MEGA 6.0 using
different species of TMUV. b) Maximum clade credibility tree
reconstructed using BEAST 2.0.
Fig. 2 Phylogenetic analysis of Tembusu virus (TMUV). a) Maximum
likelihood tree reconstructed using MEGA 6.0. b) Neighbor-Joining
phylogenetic tree reconstructed using MEGA 6.0. c) Maximum clade
credibility tree reconstructed using GTR+I+G substation model and with
an uncorrected relaxed clock (lognormal) of TMUV complete ORF gene
sequence. The different genotypes are shown using different colors.
Fig. 3 Bayesian skyline plot of Tembusu virus (TMUV). The genetic
diversity of TMUV is shown on the y-axis with 95% highest posterior
density (HPD) shown in blue.
Fig. 4 Effective number of codons (ENC)-plot analysis and neutrality
plot of TMUV complete genome. a) ENC-plot analysis show that the
observed ENC values were below the expected curve regardless of
genotype. b) Neutrality plot analysis indicated that the correlations
between GC12 and GC3 were not significant in the Tembusu virus (TMUV)
genotypes.