DATA AVAILABILITY STATEMENT
Data are available in the GenBank database and by direct contact with the correspondence author.
REFERENCES
Alam, M. M., Kobayashi, N., Ishino, M., Ahmed, M. S., Ahmed, M. U., Paul, S. K., … Naik, T. N. (2007). Genetic analysis of an ADRV-N-like novel rotavirus strain B219 detected in a sporadic case of adult diarrhea in Bangladesh. Archives of Virology , 152 , 199-208. https://doi.org/10.1007/s00705-006-0831-y
Cortey, M., Díaz, I., Vidal, A., Martín-Valls, G., Franzo, G., Gómez De Nova, P. J., … Mateu, E. (2019). High levels of unreported intraspecific diversity among RNA viruses in faeces of neonatal piglets with diarrhoea. BMC Veterinary Research , 15 , 1-13. https://doi.org/10.1186/s12917-019-2204-2
Estes MK, K. A. (2007). Rotaviruses. En M. M. et al Knipe DM, Howley PM, Griffin DE, Lamb RA (Ed.), Fields Virology (5.aed., pp. 1917-1974). Philadelphia: Lippincott Williams & Wilkins.
Jiang, S., Ji, S., Tang, Q., Cui, X., Yang, H., Kan, B., & Gao, S. (2008). Molecular characterization of a novel adult diarrhoea rotavirus strain J19 isolated in China and its significance for the evolution and origin of group B rotaviruses. Journal of General Virology ,89 , 2622-2629. https://doi.org/10.1099/vir.0.2008/001933-0
Kumar, S., Stecher, G., Li, M., Knyaz, C., & Tamura, K. (2018). MEGA X: Molecular evolutionary genetics analysis across computing platforms.Molecular Biology and Evolution , 35 , 1547-1549. https://doi.org/10.1093/molbev/msy096
Marthaler, D., Rossow, K., Culhane, M., Goyal, S., Collins, J., Matthijnssens, J., … Ciarlet, M. (2014). Widespread rotavirus H in domesticated pigs, United States. Emerging Infectious Diseases , 20 , 1195-1198. https://doi.org/10.3201/eid2007.140034
Matthijnssens, J., Otto, P. H., Ciarlet, M., Desselberger, U., van Ranst, M., & Johne, R. (2012). VP6-sequence-based cutoff values as a criterion for rotavirus species demarcation. Archives of Virology , 157 , 1177-1182. https://doi.org/10.1007/s00705-012-1273-3
Mihalov-Kovács, E., Gellért, Á., Marton, S., Farkas, S. L., Fehér, E., Oldal, M., … Bányai, K. (2015). Candidate new Rotavirus species in sheltered Dogs, Hungary. Emerging Infectious Diseases ,21 , 660-663. https://doi.org/10.3201/eid2104.141370
Molinari, B. L. D., Lorenzetti, E., Otonel, R. A. A., Alfieri, A. F., & Alfieri, A. A. (2014). Rotavirus Detected in Piglets with.Emerging Infectious Diseases , 20 , 1019-1022. https://doi.org/http://dx.doi.org/10.3201/eid2006.130776
Nagashima, S., Kobayashi, N., Ishino, M., Alam, M. M., Ahmed, M. U., Shyamal Kumar Paul, S. K., … Wang, Y. H. (2008). Whole Genomic Characterization of a Human Rotavirus Strain B219 Belonging to a Novel Group of the Genus Rotavirus Shigeo. Journal of Medical Virology ,80 , 2023-2033. https://doi.org/10.1002/jmv
Nyaga, M. M., Peenze, I., Potgieter, C. A., Seheri, L. M., Page, N. A., Yinda, C. K., … Mphahlele, M. J. (2016). Complete genome analyses of the first porcine rotavirus group H identified from a South African pig does not provide evidence for recent interspecies transmission events. Infection, Genetics and Evolution , 38 , 1-7. https://doi.org/10.1016/j.meegid.2015.11.032
Phan, M. V. T., Anh, P. H., Cuong, N. Van, Munnink, B. B. O., Hoek, L. Vander, My, P. T., … Cotten, M. (2016). Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation ofmultiple groups of rotaviruses and a putative zoonotic infection.Virus Evolution , 2 , 1-15. https://doi.org/10.1093/ve/vew027
Suzuki, T., & Inoue, D. (2018). Full genome-based genotyping system for rotavirus H and detection of potential gene recombination in nonstructural protein 3 between porcine rotavirus H and rotavirus C.Journal of General Virology , 99 , 1582-1589. https://doi.org/10.1099/jgv.0.001162
Vlasova, A. N., Amimo, J. O., & Saif, L. J. (2017). Porcine rotaviruses: Epidemiology, immune responses and control strategies.Viruses , 9 , 1-27. https://doi.org/10.3390/v9030048
Wakuda, M., Ide, T., Sasaki, J., Komoto, S., Ishii, J., Sanekata, T., & Taniguchi, K. (2011). Porcine rotavirus closely related to novel group of human rotaviruses. Emerging Infectious Diseases , 17 , 1491-1493. https://doi.org/10.3201/eid1708.101466
Yang, H., Makeyev, E. V., Kang, Z., Ji, S., Bamford, D. H., & Van Dijk, A. A. (2004). Cloning and sequence analysis of dsRNA segments 5, 6 and 7 of a novel non-group A, B, C adult rotavirus that caused an outbreak of gastroenteritis in China. Virus Research , 106 , 15-26. https://doi.org/10.1016/j.virusres.2004.05.011
Yinda, C. K., Ghogomu, S. M., Conceição-Neto, N., Beller, L., Deboutte, W., Vanhulle, E., … Matthijnssens, J. (2018). Cameroonian fruit bats harbor divergent viruses, including rotavirus H, bastroviruses, and picobirnaviruses using an alternative genetic code. Virus Evolution , 4 , 1-15. https://doi.org/10.1093/ve/vey008
Table 1. Oligonucleotide primers based on the VP6 gene designed for the detection of porcine RVH in fecal samples using RT-PCR. The nucleotide position was based on VP6 complete gene of RVH strains SKA-1 (AB576626), MRC-DPRU1575 (KT962031), MN.9.65 (KU254587) and OK.5.68 (MH230121).