References
Afema, J. A., Ahmed, S., Besser, T. E., Jones, L. P., Sischo, W. M., & Davis, M. A. (2018). Molecular Epidemiology of Dairy Cattle-Associated Escherichia coli Carrying blaCTX-M Genes in Washington State. Appl Environ Microbiol, 84 (6). doi:10.1128/aem.02430-17
Ali, T., Rahman, S. U., Zhang, L., Shahid, M., Han, D., Gao, J., . . . Han, B. (2017). Characteristics and genetic diversity of multi-drug resistant extended-spectrum beta-lactamase (ESBL)-producing Escherichia coli isolated from bovine mastitis. Oncotarget, 8 (52), 90144-90163. doi:10.18632/oncotarget.21496
Berge, A. C., Atwill, E. R., & Sischo, W. M. (2005). Animal and farm influences on the dynamics of antibiotic resistance in faecal Escherichia coli in young dairy calves. Prev Vet Med, 69 (1-2), 25-38. doi:10.1016/j.prevetmed.2005.01.013
Breen, J. E., Green, M. J., & Bradley, A. J. (2009). Quarter and cow risk factors associated with the occurrence of clinical mastitis in dairy cows in the United Kingdom. J Dairy Sci, 92 (6), 2551-2561. doi:10.3168/jds.2008-1369
Carroll, L. M., Gaballa, A., Guldimann, C., Sullivan, G., Henderson, L. O., & Wiedmann, M. (2019). Identification of Novel Mobilized Colistin Resistance Gene mcr-9 in a Multidrug-Resistant, Colistin-Susceptible Salmonella enterica Serotype Typhimurium Isolate. MBio, 10 (3). doi:10.1128/mBio.00853-19
Clermont, O., Christenson, J. K., Denamur, E., & Gordon, D. M. (2013). The Clermont Escherichia coli phylo-typing method revisited: improvement of specificity and detection of new phylo-groups. Environ Microbiol Rep, 5 (1), 58-65. doi:10.1111/1758-2229.12019
CLSI, C. (2016). Performance standards for antimicrobial susceptibility testing. Clinical Lab Standards Institute .
Coque, T. M., Baquero, F., & Canton, R. (2008). Increasing prevalence of ESBL-producing Enterobacteriaceae in Europe. Euro Surveill, 13 (47).
D’Andrea, M. M., Arena, F., Pallecchi, L., & Rossolini, G. M. (2013). CTX-M-type beta-lactamases: a successful story of antibiotic resistance.Int J Med Microbiol, 303 (6-7), 305-317. doi:10.1016/j.ijmm.2013.02.008
Eisenberger, D., Carl, A., Balsliemke, J., Kampf, P., Nickel, S., Schulze, G., & Valenza, G. (2018). Molecular Characterization of Extended-Spectrum beta-Lactamase-Producing Escherichia coli Isolates from Milk Samples of Dairy Cows with Mastitis in Bavaria, Germany.Microb Drug Resist, 24 (4), 505-510. doi:10.1089/mdr.2017.0182
Falgenhauer, L., Imirzalioglu, C., Ghosh, H., Gwozdzinski, K., Schmiedel, J., Gentil, K., . . . Chakraborty, T. (2016). Circulation of clonal populations of fluoroquinolone-resistant CTX-M-15-producing Escherichia coli ST410 in humans and animals in Germany. Int J Antimicrob Agents, 47 (6), 457-465. doi:10.1016/j.ijantimicag.2016.03.019
Feil, E. J., Li, B. C., Aanensen, D. M., Hanage, W. P., & Spratt, B. G. (2004). eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J Bacteriol, 186 (5), 1518-1530. doi:10.1128/jb.186.5.1518-1530.2004
Francisco, A. P., Bugalho, M., Ramirez, M., & Carrico, J. A. (2009). Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach. BMC Bioinformatics, 10 , 152. doi:10.1186/1471-2105-10-152
Gao, R., Hu, Y., Li, Z., Sun, J., Wang, Q., Lin, J., . . . Feng, Y. (2016). Dissemination and Mechanism for the MCR-1 Colistin Resistance.PLoS Pathog, 12 (11), e1005957. doi:10.1371/journal.ppat.1005957
Geser, N., Stephan, R., & Hächler, H. (2012). Occurrence and characteristics of extended-spectrum β-lactamase (ESBL) producing Enterobacteriaceae in food producing animals, minced meat and raw milk.BMC veterinary research, 8 (1), 21.
Grohn, Y. T., Gonzalez, R. N., Wilson, D. J., Hertl, J. A., Bennett, G., Schulte, H., & Schukken, Y. H. (2005). Effect of pathogen-specific clinical mastitis on herd life in two New York State dairy herds.Prev Vet Med, 71 (1-2), 105-125. doi:10.1016/j.prevetmed.2005.06.002
Henriques, S., Silva, E., Lemsaddek, A., Lopes-da-Costa, L., & Mateus, L. (2014). Genotypic and phenotypic comparison of Escherichia coli from uterine infections with different outcomes: clinical metritis in the cow and pyometra in the bitch. Vet Microbiol, 170 (1-2), 109-116.
Heuvelink, A. E., Gonggrijp, M. A., Buter, R. G. J., Ter Bogt-Kappert, C. C., van Schaik, G., Velthuis, A. G. J., & Lam, T. (2019). Prevalence of extended-spectrum and AmpC beta-lactamase-producing Escherichia coli in Dutch dairy herds. Vet Microbiol, 232 , 58-64. doi:10.1016/j.vetmic.2019.04.005
Kar, D., Bandyopadhyay, S., Bhattacharyya, D., Samanta, I., Mahanti, A., Nanda, P. K., . . . Singh, R. K. (2015). Molecular and phylogenetic characterization of multidrug resistant extended spectrum beta-lactamase producing Escherichia coli isolated from poultry and cattle in Odisha, India. Infect Genet Evol, 29 , 82-90. doi:10.1016/j.meegid.2014.11.003
Kuo, S. C., Huang, W. C., Wang, H. Y., Shiau, Y. R., Cheng, M. F., & Lauderdale, T. L. (2016). Colistin resistance gene mcr-1 in Escherichia coli isolates from humans and retail meats, Taiwan. J Antimicrob Chemother, 71 (8), 2327-2329. doi:10.1093/jac/dkw122
Liu, H., Wang, Y., Wang, G., Xing, Q., Shao, L., Dong, X., . . . Ma, L. (2015). The prevalence of Escherichia coli strains with extended spectrum beta-lactamases isolated in China. Front Microbiol, 6 , 335. doi:10.3389/fmicb.2015.00335
Marashifard, M., Karimi Aliabad, Z., Malek Hosseini, S. A. A., Darban-Sarokhalil, D., Mirzaii, M., & Khoramrooz, S. S. (2019). Determination of antibiotic resistance pattern and virulence genes in Escherichia coli isolated from bovine with subclinical mastitis in southwest of Iran. Trop Anim Health Prod, 51 (3), 575-580. doi:10.1007/s11250-018-1726-0
Munoz, M. A., Bennett, G. J., Ahlstrom, C., Griffiths, H. M., Schukken, Y. H., & Zadoks, R. N. (2008). Cleanliness scores as indicator of Klebsiella exposure in dairy cows. J Dairy Sci, 91 (10), 3908-3916. doi:10.3168/jds.2008-1090
Müştak, H. K., Günaydin, E., Kaya, İ. B., Salar, M. Ö., Babacan, O., Önat, K., . . . Diker, K. S. (2015). Phylo-typing of clinical Escherichia coli isolates originating from bovine mastitis and canine pyometra and urinary tract infection by means of quadruplex PCR.Veterinary Quarterly, 35 (4), 194-199.
Ohnishi, M., Okatani, A. T., Harada, K., Sawada, T., Marumo, K., Murakami, M., . . . Takahashi, T. (2013). Genetic characteristics of CTX-M-type extended-spectrum-beta-lactamase (ESBL)-producing enterobacteriaceae involved in mastitis cases on Japanese dairy farms, 2007 to 2011. J Clin Microbiol, 51 (9), 3117-3122. doi:10.1128/jcm.00920-13
PulseNet, C. (2017). Standard operating procedure for PulseNet PFGE of Escherichia coli O157: H7, Escherichia coli non-O157 (STEC), Salmonella serotypes, Shigella sonnei and Shigella flexneri. PNL05. Centers for Disease Control and Prevention, Atlanta, GA. In.
Ribeiro-Goncalves, B., Francisco, A. P., Vaz, C., Ramirez, M., & Carrico, J. A. (2016). PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees. Nucleic Acids Res, 44 (W1), W246-251. doi:10.1093/nar/gkw359
Sacramento, A. G., Fernandes, M. R., Sellera, F. P., Munoz, M. E., Vivas, R., Dolabella, S. S., & Lincopan, N. (2018). Genomic analysis of MCR-1 and CTX-M-8 co-producing Escherichia coli ST58 isolated from a polluted mangrove ecosystem in Brazil. J Glob Antimicrob Resist, 15 , 288-289. doi:10.1016/j.jgar.2018.10.024
Schaufler, K., Semmler, T., Wieler, L. H., Wohrmann, M., Baddam, R., Ahmed, N., . . . Guenther, S. (2016). Clonal spread and interspecies transmission of clinically relevant ESBL-producing Escherichia coli of ST410–another successful pandemic clone? FEMS Microbiol Ecol, 92 (1). doi:10.1093/femsec/fiv155
Seiffert, S. N., Hilty, M., Perreten, V., & Endimiani, A. (2013). Extended-spectrum cephalosporin-resistant Gram-negative organisms in livestock: an emerging problem for human health? Drug Resist Updat, 16 (1-2), 22-45. doi:10.1016/j.drup.2012.12.001
Shafiq, M., Huang, J., Ur Rahman, S., Shah, J. M., Chen, L., Gao, Y., . . . Wang, L. (2019). High incidence of multidrug-resistant Escherichia coli coharboring mcr-1 and bla (CTX-M-15) recovered from pigs.Infection and drug resistance, 12 , 2135-2149. doi:10.2147/IDR.S209473
Silva, E., Leitão, S., Tenreiro, T., Pomba, C., Nunes, T., da Costa, L. L., & Mateus, L. (2009). Genomic and phenotypic characterization of Escherichia coli isolates recovered from the uterus of puerperal dairy cows. J Dairy Sci, 92 (12), 6000-6010.
Skov, R. L., & Monnet, D. L. (2016). Plasmid-mediated colistin resistance (mcr-1 gene): three months later, the story unfolds.Euro Surveill, 21 (9), 30155. doi:10.2807/1560-7917.es.2016.21.9.30155
Suojala, L., Kaartinen, L., & Pyorala, S. (2013). Treatment for bovine Escherichia coli mastitis - an evidence-based approach. J Vet Pharmacol Ther, 36 (6), 521-531. doi:10.1111/jvp.12057
Suojala, L., Pohjanvirta, T., Simojoki, H., Myllyniemi, A. L., Pitkala, A., Pelkonen, S., & Pyorala, S. (2011). Phylogeny, virulence factors and antimicrobial susceptibility of Escherichia coli isolated in clinical bovine mastitis. Vet Microbiol, 147 (3-4), 383-388. doi:10.1016/j.vetmic.2010.07.011
Suzuki, S., Ohnishi, M., Kawanishi, M., Akiba, M., & Kuroda, M. (2016). Investigation of a plasmid genome database for colistin-resistance gene mcr-1. Lancet Infect Dis, 16 (3), 284-285. doi:10.1016/s1473-3099(16)00008-6
Tamura, K., Stecher, G., Peterson, D., Filipski, A., & Kumar, S. (2013). MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.Mol Biol Evol, 30 (12), 2725-2729. doi:10.1093/molbev/mst197
Tenover, F. C., Arbeit, R. D., Goering, R. V., Mickelsen, P. A., Murray, B. E., Persing, D. H., & Swaminathan, B. (1995). Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing. J Clin Microbiol, 33 (9), 2233-2239.
Timofte, D., Maciuca, I. E., Evans, N. J., Williams, H., Wattret, A., Fick, J. C., & Williams, N. J. (2014). Detection and molecular characterization of Escherichia coli CTX-M-15 and Klebsiella pneumoniae SHV-12 beta-lactamases from bovine mastitis isolates in the United Kingdom. Antimicrob Agents Chemother, 58 (2), 789-794. doi:10.1128/aac.00752-13
Wirth, T., Falush, D., Lan, R., Colles, F., Mensa, P., Wieler, L. H., . . . Achtman, M. (2006). Sex and virulence in Escherichia coli: an evolutionary perspective. Mol Microbiol, 60 (5), 1136-1151. doi:10.1111/j.1365-2958.2006.05172.x
Yu, T., He, T., Yao, H., Zhang, J.-B., Li, X.-N., Zhang, R.-M., & Wang, G.-Q. (2015). Prevalence of 16S rRNA methylase gene rmtB among Escherichia coli isolated from bovine mastitis in Ningxia, China.Foodborne pathogens and disease, 12 (9), 770-777.
Zhang, D., Zhang, Z., Huang, C., Gao, X., Wang, Z., Liu, Y., . . . Liu, M. (2018). The phylogenetic group, antimicrobial susceptibility, and virulence genes of Escherichia coli from clinical bovine mastitis.J Dairy Sci, 101 (1), 572-580. doi:10.3168/jds.2017-13159
Zheng, B., Feng, C., Xu, H., Yu, X., Guo, L., Jiang, X., & Song, X. (2019). Detection and characterization of ESBL-producing Escherichia coli expressing mcr-1 from dairy cows in China. J Antimicrob Chemother, 74 (2), 321-325. doi:10.1093/jac/dky446