References and Notes
- D. Kosenkov, J. Comp. Chem. 2016 , 37, 1847-1854.
- Y. Kholod, M. DeFilippo, B. Reed, D. Valdez, G. Gillan, and D.
Kosenkov, J. Comp. Chem. 2018 , 39, 438-449.
- Y. K. Kosenkov and D. Kosenkov, J. Chem. Phys. 2019 ,
151, 144101.
- G. Linden, L. Zhang, F. Pieck, U. Linne, D. Kosenkov, R. Tonner, and
O. Vazquez, Angew. Chem. Int. Ed. 2019 , 58,
12868-12873.
- R. E. Blankenship, D. M. Tiede, J. Barber, G. W. Brudvig, G. Fleming,
M. Ghirardi, M. R. Gunner, W. Junge, D. M. Kramer, A. Melis, T. A.
Moore, C. C. Moser, D. G. Nocera, A. J. Nozik, D. R. Ort, W. W.
Parson, R. C. Prince, R. T. Sayre, Science, 2011 , 332,
805-809.
- C. Curutchet, B. Mennucci, Chem. Rev. 2017 , 117,
294–343.
- G. D. Scholes, G. R. Fleming, A. Olaya-Castro, R. van Grondelle,Nat. Chem. 2011 , 3, 763–774.
- A. Chenu, G. D. Scholes, Annu. Rev. Phys. Chem. 2015 ,
66, 69-96.
- O. G. Reid, G. Rumbles, J. Phys. Chem. C , 2016 , 120,
87–97.
- G. S. Engel, T. R. Calhoun, E. L. Read, T.-K. Ahn, T. Mančal, Y.-C.
Cheng, R. E. Blankenship, G. R. Fleming, Nature , 2007 ,
446, 782–786.
- G. Li, R. Zhu, Y. Yang Nat. Photonics, 2012 , 6,
153–161.
- M. Kaltenbrunner, M. S.White, E. D. Głowacki, T. Sekitani, T. Someya,
N. S. Sariciftci, S. Bauer, Nat. Commun. 2012 , 770.
- M. B. Schubert, J. H.Werner, Mater. Today, 2006 , 9,
42–50.
- M.S. Gordon, M.W. Schmidt, In Theory and Applications of Computational
Chemistry: the first forty years. C.E. Dykstra, G. Frenking, K.S. Kim,
G.E. Scuseria, (Eds.), Elsevier: Amsterdam, 2005 , 1167-1189.
- Gaussian 16, Revision B.01, M. J. Frisch, G. W. Trucks, H. B.
Schlegel, G. E. Scuseria, M. A. Robb, J. R. Cheeseman, G. Scalmani, V.
Barone, G. A. Petersson, H. Nakatsuji, X. Li, M. Caricato, A. V.
Marenich, J. Bloino, B. G. Janesko, R. Gomperts, B. Mennucci, H. P.
Hratchian, J. V. Ortiz, A. F. Izmaylov, J. L. Sonnenberg, D.
Williams-Young, F. Ding, F. Lipparini, F. Egidi, J. Goings, B. Peng,
A. Petrone, T. Henderson, D. Ranasinghe, V. G. Zakrzewski, J. Gao, N.
Rega, G. Zheng, W. Liang, M. Hada, M. Ehara, K. Toyota, R. Fukuda, J.
Hasegawa, M. Ishida, T. Nakajima, Y. Honda, O. Kitao, H. Nakai, T.
Vreven, K. Throssell, J. A. Montgomery, Jr., J. E. Peralta, F.
Ogliaro, M. J. Bearpark, J. J. Heyd, E. N. Brothers, K. N. Kudin, V.
N. Staroverov, T. A. Keith, R. Kobayashi, J. Normand, K. Raghavachari,
A. P. Rendell, J. C. Burant, S. S. Iyengar, J. Tomasi, M. Cossi, J. M.
Millam, M. Klene, C. Adamo, R. Cammi, J. W. Ochterski, R. L. Martin,
K. Morokuma, O. Farkas, J. B. Foresman, and D. J. Fox, Gaussian, Inc.,
Wallingford CT, 2016 .
- T. Förster, Naturwissenschaften, 1946 , 33, 166−175.
- Th. Förster, Delocalized Excitation and Excitation Transfer,1965 , Florida State University, Tallahassee, Florida.
- E. K. Irish, R. Gómez-Bombarelli, B. W. Lovett, Phys. Rev. A ,2014 , 90, 012510.
- RCSB Protein Data Bank https://www.rcsb.org/ (Accesses Apr 8,
2020)
- J. C. Gower, G. B. Dijksterhuis, Procrustes Problems; Oxford
University Press: Oxford, 2004 .
- .J. Wen, J. Harada, K. Buyle, K. Yuan, H. Tamiaki, H. Oh-oka, R.A.
Loomis, R.E. Blankenship, Biochemistry, 2010 ,
49, 5455-63.
- E. L. Read, G. S. Schlau-Cohen, G.S. Engel, J. Wen, R.E. Blankenship,
G.R. Fleming, Biophys. J. 2008 , 95 , 847-856.
- T. Renger, Photosynth. Res. 2009 , 102, 471-485.
- C. Curutchet, G. D. Scholes, B. Mennucci, R. Cammi, J. Phys.
Chem. B. 2007 , 111, 13253- 13265.
- G. D. Scholes, Annu. Rev. Phys. Chem. 2003 , 54, 57-87.
- O’Neil, M.J. (ed.). The Merck Index - An Encyclopedia of
Chemicals, Drugs, and Biologicals. Cambridge, UK: Royal Society of
Chemistry, 2013., p. 14
https://pubchem.ncbi.nlm.nih.gov/compound/acetonitrile#section=Spectral-Properties(Accessed Apr 8, 2020)
- H-P. Breuer, F. Petruccione, The Theory of Open Quantum
Systems; Oxford Univ. Press: Oxford 2002 .
- The Python Standard Library https://docs.python.org/2.7/library/
(Accessed Apr 8, 2020)
- NumPy https://numpy.org/ (Accessed Apr 8, 2020)
- SciPy https://www.scipy.org/ (Accessed Apr 8, 2020)
- cubegen https://gaussian.com/cubegen/ (Accessed Apr 8, 2020
- Jmol: an open-source Java viewer for chemical structures in 3D
http://jmol.sourceforge.net/ (Accessed Apr 8, 2020)
- PyAudio 0.2.11 https://pypi.org/project/PyAudio/ (Accessed Apr
8, 2020)
- P. Virtanen, R. Gommers, Nat. Methods , 2020 , 17,
261–272.
- urllib2 — extensible library for opening URL
https://docs.python.org/2/library/urllib2.html#module-urllib2
(Accessed Apr 8, 2020)
- NetworkX Software for complex networks
https://networkx.github.io/ (Accessed Apr 8, 2020)
- Shields, G. C., Twenty Years of Exceptional Success: The Molecular
Education and Research Consortium in Undergraduate computational
chemistRY (MERCURY). Int. J. Quantum Chem.2020, under review .
- C.-P. Hsu. J. Chem. Phys. 2001 , 114, 3065.
- J. Frenkel, J. Phys. Rev. 1931 , 37, 17−44.
- A. Davydov, Theory of Molecular Excitons, 1971, Springer US: New York,1971 .