SV Microhomologies at breakpoints Repetitive elements Repetitive elements Non-B DNA Non-B DNA Secondary structures Secondary structures Recombinogenic DNA motifs Recombinogenic DNA motifs
Del T - LTR - - Yes Yes Jurka, SAR Ig heavy chain switch
Dup T, -, AG LINE L1, -, LINE L1 -, LINE L1, - -, -, - -, -, cruciform motif Yes, Yes, Yes Yes, Yes, No Jurka, Jurka, Jurka Jurka, Jurka, Jurka
LTR: long terminal repeats; Jurka: hexanucleotide motifs targeted by the endonuclease/retro-transcriptase of mammalian retroposons; SAR: scaffold attachment region; LINE: long interspersed nuclear elements. LTR: long terminal repeats; Jurka: hexanucleotide motifs targeted by the endonuclease/retro-transcriptase of mammalian retroposons; SAR: scaffold attachment region; LINE: long interspersed nuclear elements. LTR: long terminal repeats; Jurka: hexanucleotide motifs targeted by the endonuclease/retro-transcriptase of mammalian retroposons; SAR: scaffold attachment region; LINE: long interspersed nuclear elements. LTR: long terminal repeats; Jurka: hexanucleotide motifs targeted by the endonuclease/retro-transcriptase of mammalian retroposons; SAR: scaffold attachment region; LINE: long interspersed nuclear elements. LTR: long terminal repeats; Jurka: hexanucleotide motifs targeted by the endonuclease/retro-transcriptase of mammalian retroposons; SAR: scaffold attachment region; LINE: long interspersed nuclear elements. LTR: long terminal repeats; Jurka: hexanucleotide motifs targeted by the endonuclease/retro-transcriptase of mammalian retroposons; SAR: scaffold attachment region; LINE: long interspersed nuclear elements. LTR: long terminal repeats; Jurka: hexanucleotide motifs targeted by the endonuclease/retro-transcriptase of mammalian retroposons; SAR: scaffold attachment region; LINE: long interspersed nuclear elements. LTR: long terminal repeats; Jurka: hexanucleotide motifs targeted by the endonuclease/retro-transcriptase of mammalian retroposons; SAR: scaffold attachment region; LINE: long interspersed nuclear elements. LTR: long terminal repeats; Jurka: hexanucleotide motifs targeted by the endonuclease/retro-transcriptase of mammalian retroposons; SAR: scaffold attachment region; LINE: long interspersed nuclear elements. LTR: long terminal repeats; Jurka: hexanucleotide motifs targeted by the endonuclease/retro-transcriptase of mammalian retroposons; SAR: scaffold attachment region; LINE: long interspersed nuclear elements.