Niyomi House

and 15 more

The human head louse (Pediculus humanus capitis) is an obligate ectoparasite of humans and has the potential to uncover aspects of human history that cannot be directly inferred from genetic data derived from humans. Previous studies have shown that global louse populations exhibit restricted patterns of genetic variation. However, these studies were restricted both genetically and lacked a global sampling. With the aim of capturing the genetic diversity of head louse populations from around the world, we generated whole genome sequences of human head lice from 43 countries, spanning five continents and Oceania, to determine if louse nuclear diversity mirrors its mitochondrial haplotypes or if population genetic structure, genetic diversity, and population connectivity are associated with geographical regions or host behavior. Here we show that there are five nuclear genetic clusters that are associated with large geographical regions, either at continental or intercontinental levels. High genetic variation was found between African and non-African individuals and the highest genetic diversity was found in samples from sub-Saharan Africa, similar to that of humans. Unlike the mitochondrial clades examined in previous studies, nuclear genetic clusters of lice examined here are highly structured based on geography (continentally and major regions within continents). Results from our genome analyses revealed that host-mediated global dispersal as the likely primary process in shaping diversity and maintaining genetic population boundaries within the nuclear genome of the human head louse.

Jakub Vlček

and 3 more

Population and conservation genetics seek to understand how adaptive diversity is shaped by the interweaving forces of molecular evolution in small and endangered populations. On the one hand, selection shapes variation, on the other hand, genetic drift impedes the selection by stochastic changes of allele frequencies. Drift is hypothesised to prevail if the population size is small. However, in practice empirical estimates of the population size are often challenging. Here we used island size as a proxy to population size to reveal the evolutionary constraints of molecular diversity in Toll-like receptors (TLRs) of mockingbirds (genus Mimus) inhabiting Galápagos islands. TLRs are crucial for pathogen recognition by host immunity and thus under various selection constraints. We focused on the interaction of drift and selection in TLR1B, TLR4, and TLR15 across 12 size-variable insular populations and compared them with the mainland population of the northern mockingbird (Mimus polyglottos), aiming to test if population size impacts selection efficiency. Nucleotide diversity positively correlated with the island size indicating an increasing effect of genetic drift in small populations. Despite this pattern, functional TLR properties were largely conserved, presumably due to purifying selection opposing drift independently on the island size. The degree of protein conservatism differed between the loci with TLR15 being the least conserved. Island colonisation did not lead to relaxed selection or to local adaptations. Together with the invariable physicochemical properties of the TLR variants, these observations imply that drift did not outweigh purifying selection despite restricted population size.