Table 2: List of flowering pathway genes selected for expression
analysis in C. pallens
Gene |
A. thaliana homologue |
A. thaliana locus ID |
Rice
homologue |
Rice protein ID |
% Identity |
E-value |
%Gaps |
Contig
ID |
Cp GI |
GIGANTEA |
AT1G22770 |
OsGI |
CAB56058.1 |
95.24 |
0 |
0.00E+00 |
TRINITY_DN35492_c2_g6_i1 |
Cp Ehd3 |
|
|
OsEhd3 |
BAI77463.1 |
78.35 |
3.27E-52 |
0.00E+00 |
TRINITY_DN32679_c1_g8_i1 |
Cp MADS50 |
|
AT2G45660 |
OsMADS50 |
Q9XJ60.1 |
78.39 |
0.00 |
1.4 |
TRINITY_DN25163_c1_g3_i4 |
CpHd1 |
CO |
AT5G15840 |
OsHd1 |
BAB17628.1 |
73.06 |
1.00E-93 |
0 |
TRINITY_DN28069_c0_g1_i3 |
CpTPS1 |
TPS1 |
AT1G78580 |
OsTPS1 |
BAG89812.1 |
86.09 |
0.00E+00 |
0 |
TRINITY_DN51229_c0_g1_i1 |
CpMADS1 |
SOC1 |
AT2G45660 |
ZmMADS1 |
NP_001105152.1 |
78.8 |
8.50E-99 |
2.17E+00 |
TRINITY_DN25163_c1_g3_i4 |
CpFT2 |
FT |
AT1G65480 |
OsHd3a |
BAB61030.1 |
85 |
3.90E-63 |
0.00E+00 |
TRINITY_DN32350_c0_g3_i1 |
CpFT3 |
FT |
AT1G65480 |
OsHd3a |
BAB61030.1 |
62.75 |
1.26E-68 |
6.50E-01 |
TRINITY_DN108898_c0_g1_i2 |
CpFT4 |
FT |
AT1G65480 |
OsHd3a |
BAB61030.1 |
72.9 |
4.09E-57 |
0.00E+00 |
TRINITY_DN37301_c2_g2_i1 |
CpFT5 |
FT |
AT1G65480 |
OsHd3a |
BAB61030.1 |
66.06 |
6.13E-51 |
0.92 |
TRINITY_DN61628_c0_g1_i3 |
CpVRN1 |
VRN1 |
AT3G18990 |
BdVRN1 |
XP_010237091.1 |
86.08 |
3.57E-84 |
0.00E+00 |
TRINITY_DN37693_c0_g1_i1 |
CpATFL1 |
TFL1 |
AT5G03840 |
ZCN1 |
ABW96224.1 |
82 |
0 |
1.60E-01 |
TRINITY_DN91976_c0_g2_i1 |